BAC Information

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BAC

Clone NameMSMg01-160A18
ChromosomeX (Build37)
Map Location 117,738,196 - 117,738,424
singlet/doubletsinglet
Overlap genePcdh11x
Upstream genePabpc5, LOC236983, LOC674318, EG545741, LOC100039461, H2afb3
Downstream geneLOC245576, LOC385419, EG434907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160A18.T7 (MSMg01no160_a18.b1)MSMg01-160A18.TJ (MSMg01no160_a18.g1)
ACCAG359820AG359821
length698783
length of high quality
(start - end)
229 (104 - 332)283 (133 - 415)
definitionCHROMAT_FILE: MSMg01no160_a18.b1 PHD_FILE: MSMg01no160_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:54 2005CHROMAT_FILE: MSMg01no160_a18.g1 PHD_FILE: MSMg01no160_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCACTATTCGGAGAGGATCCGCGGAATTCTCAAATTTCCAGAAATCGAA
CGGTCAATGACCCAGTTACACCACACATGAGTTTGAGGATTTTTATCTCC
TAATATAGAAATTCTTAATTTTTTATGTTCATTTACTGTAGCTATGAAAT
GAAAACAGTTAAGTTTTTCATCATCTGATGAGTGGATAATTAAAATGTAC
ACACACACAAAAGAGTTTGATTAATTACAAGTGAATAGATTTATATGAAA
GTATATGTGGATTATAGATTTTACATTTTAGAATATCTAAAGAGATATTA
ATGGGATCTGGGGTAATGAGAATATCCATTAATATTAATGGAAATCAAAG
GTAAGTTTTCACATTCCAAAGTTCCAAAGTCTTGTTGATACTCAACTATA
TCAAAGGAATCTTAGTTAAAAAAAGGTCATGCTAAGTACATACTTAAACA
CTGAGTTATAGCACATTGAAATTAGGTTATTAATTCTGCATATCATCAGA
TTTTAAATTACAGATATATTAGCACCTGGAACTATTATTTTGTGTTTCAA
AATGAGAACTGCTTATGTCGTTTATCTTAATATCTTTATTAAACTATATT
CCTACATAAAAATGTATAAAACATTGAAAACAAGACTATTTCGAAGTGCA
TTGCCAGATTATTTAATTAGTAATGTTTTAATGTAGAGGTATATTCCN
TTTTTCTTTTTCTCCTTTTCTCTCTTTTTCTCCCTCTTTTTTCCANNNNN
NTTTATCTATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAAAAATACCGA
ATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACT
CTGGAAATCAGTCTGGGGGTTCCTCAGAAAATTGCACATAGTACTACCGG
AGGACCCAGCAATACTTCTTTTGTCCACCACCCCCCCAAGATGCCCCACC
TGGTAAGAAGGACACATGCCCCACTATGTTCATAGAAGCCTTATTTATAA
TAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATA
CAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAA
GAATGAATTTATGAAATTCCTTGCCAAATGGATGGACCTGGAGGGCATCA
TCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACCATATGTACTCA
CTGATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATA
CATTTTCCTAACCACATGAAACTCAAGAAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_a18.b1 MSMg01no160_a18.b1 CHROMAT_FILE:
MSMg01no160_a18.b1 PHD_FILE: MSMg01no160_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:54 2005
         (229 letters)



>mm_chrX_117737889_117738517
          Length = 629

 Score =  443 bits (229), Expect = e-129
 Identities = 229/229 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatagaaattcttaattttttatgttcatttactgtagctatgaaatgaaaacagttaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tatagaaattcttaattttttatgttcatttactgtagctatgaaatgaaaacagttaag 477

                                                                       
Query: 61  tttttcatcatctgatgagtggataattaaaatgtacacacacacaaaagagtttgatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tttttcatcatctgatgagtggataattaaaatgtacacacacacaaaagagtttgatta 417

                                                                       
Query: 121 attacaagtgaatagatttatatgaaagtatatgtggattatagattttacattttagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 attacaagtgaatagatttatatgaaagtatatgtggattatagattttacattttagaa 357

                                                            
Query: 181 tatctaaagagatattaatgggatctggggtaatgagaatatccattaa 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tatctaaagagatattaatgggatctggggtaatgagaatatccattaa 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)