BAC Information

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BAC

Clone NameMSMg01-160H14
ChromosomeX (Build37)
Map Location 40,555,882 - 40,730,445
singlet/doubletdoublet
Overlap geneOdz1
Upstream geneStag2, LOC100039899, Sh2d1a
Downstream geneGm362, LOC100039977, LOC100039987, LOC637141, Wdr40c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160H14.T7 (MSMg01no160_h14.b1)MSMg01-160H14.TJ (MSMg01no160_h14.g1)
ACCAG360137AG360138
length740801
length of high quality
(start - end)
309 (47 - 355)242 (74 - 315)
definitionCHROMAT_FILE: MSMg01no160_h14.b1 PHD_FILE: MSMg01no160_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:26 2005CHROMAT_FILE: MSMg01no160_h14.g1 PHD_FILE: MSMg01no160_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,730,142 - 40,730,445)(40,555,882 - 40,556,121)
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGCATATTCCTTCCACTTGCCCTGACACACATCTATCACAGAC
ATTGGTTAGTACACATGTCAGCAAATGTATAAAGTTTCTTGGCTGCCTGA
CACCGGTGAAACCATCAGCATAGATGAATCAAGTAGAAATACTGCATAAA
CTTTTGCCATCTCTTGGTAACCTGTTAAATCATAATAACTGGAGATGAAA
TCCAAGAAATGGCATACTGCCAACTCTGTAGTCTAGTTAAACTATGAATG
TGGTATTCAGAACCTGTAAGCTAGCTGAACATCCAATAACACTGTTTTGA
GAAGACTATTTATTAACTATCCCTCGGCTACAACCCTAAATCCACTAGGT
ACAAACATTTAACCCACTATGACCCATCATTCCTGTTCTAAAGGGCTGTT
CCTTCATTTCTCTTTATAAACTGACTGACTTGGTTTTTAGTTTTCTTTCA
TTTCTATTTATTGCAACTTTGTTTCATTTTAACACTTAGTTACAAACAAG
GGACATTTTAAATGTTTCATACTACCTGAAGGTGCTGTGCACACTTAGGG
AGAAGAAAACTCATCAGCCATCTTACTTATTTGTGAACTCTGAAAACTGT
AATTATTAGCTAGATATGATACGTCCATGGGGACAATAGTGGCACAAATG
TTGTACTAGTAAACAACCAGTTTCTGATTCCATTTAANGC
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATTTACTGTAGTTGATGTGCTCTTTT
TCCCCCTACTTGTTTCAGTTTGAAATTAGTGTCTTGATTAAATTCTAAAG
GCAACCGTGCTAATAATAAGCCTGTCAAGGACTTATCCTGTATAGTAAGG
GTCTGGCTACAGACATCCCATTAGTGAATGTGTAATTTTACTTTGAGTTT
TATGTATTTCTGTCTGTGTTCACTTTTTAAATTATGCTATTTATTTGAAG
GGATCATTTTATAAATAATTTGATGAGGTGAGAGTTTCTAGGAAGTCAGN
GAATTTTGGGTAATTCCCCAACAACCCCCAGGAACGTTTTTGTATATTAA
AATTTCTTTACCCCCCATAAAAAAAAAAAAAAAAACTTTGTTTGTTGGCC
TTTCCTTTTGTTTAAGAATTGGCATTCATTTGGTGTTACTATGAAATATC
TATCATTTTTTATTGACCATCTATTATTATTTCTCTTACTAATTTTTTTT
TTTATATTTTTTTGTTTTGATTTATCATTTATTCATTCCTTGTTTCATTT
ATCTTATGTTTTATTTATTCTAAATTTTTCAATTTTTATTTAATTTTATT
CTGCTCTTCATTACTCTCTATTTTTNTNNTNTANANTATTTCTTTTTTTT
TTTTTCAATTATTATCTTTAATATTTTAATGTCTCTTCTCAATCACCTTT
TCCTTTTTATATTTCAATCTTCTCAGCTTCGATTTTCTTAATTATATAAT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_h14.b1 MSMg01no160_h14.b1 CHROMAT_FILE:
MSMg01no160_h14.b1 PHD_FILE: MSMg01no160_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:26 2005
         (309 letters)



>mm_chrX_40729938_40730646
          Length = 709

 Score =  588 bits (304), Expect = e-172
 Identities = 304/304 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagcatattccttccacttgccctgacacacatctatcacagacattggttagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gaattccagcatattccttccacttgccctgacacacatctatcacagacattggttagt 449

                                                                       
Query: 65  acacatgtcagcaaatgtataaagtttcttggctgcctgacaccggtgaaaccatcagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 acacatgtcagcaaatgtataaagtttcttggctgcctgacaccggtgaaaccatcagca 389

                                                                       
Query: 125 tagatgaatcaagtagaaatactgcataaacttttgccatctcttggtaacctgttaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tagatgaatcaagtagaaatactgcataaacttttgccatctcttggtaacctgttaaat 329

                                                                       
Query: 185 cataataactggagatgaaatccaagaaatggcatactgccaactctgtagtctagttaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cataataactggagatgaaatccaagaaatggcatactgccaactctgtagtctagttaa 269

                                                                       
Query: 245 actatgaatgtggtattcagaacctgtaagctagctgaacatccaataacactgttttga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 actatgaatgtggtattcagaacctgtaagctagctgaacatccaataacactgttttga 209

               
Query: 305 gaag 308
           ||||
Sbjct: 208 gaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no160_h14.g1 MSMg01no160_h14.g1 CHROMAT_FILE:
MSMg01no160_h14.g1 PHD_FILE: MSMg01no160_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:26 2005
         (242 letters)



>mm_chrX_40555682_40556323
          Length = 642

 Score =  456 bits (236), Expect = e-133
 Identities = 239/240 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatttactgtagttgatgtgctctttttccccctacttgtttcagtttgaaattagtgtc 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatttactgtagtttatgtgctctttttccccctacttgtttcagtttgaaattagtgtc 260

                                                                       
Query: 61  ttgattaaattctaaaggcaaccgtgctaataataagcctgtcaaggacttatcctgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgattaaattctaaaggcaaccgtgctaataataagcctgtcaaggacttatcctgtat 320

                                                                       
Query: 121 agtaagggtctggctacagacatcccattagtgaatgtgtaattttactttgagttttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtaagggtctggctacagacatcccattagtgaatgtgtaattttactttgagttttat 380

                                                                       
Query: 181 gtatttctgtctgtgttcactttttaaattatgctatttatttgaagggatcattttata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatttctgtctgtgttcactttttaaattatgctatttatttgaagggatcattttata 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)