BAC Information

Click to search

BAC

Clone NameMSMg01-161I06
ChromosomeX (Build37)
Map Location 8,789,729 - 8,790,105
singlet/doubletsinglet
Overlap geneLancl3
Upstream geneFtsj1, Slc38a5, Ssxb10, Ssxb9, Ssxb1, Ssxb2, LOC546263, Ssxb6, Ssxb3, EG627853, EG627857, LOC668977, LOC631002, Ssx9, Ssxb5, LOC625480, EG436188, B630019K06Rik, LOC100009698, LOC436189, LOC673817, LOC331380, EG434726, LOC100043940, EG434727, LOC436190, LOC100042782, EG668980, Fthl17, LOC100043942, EG434728, LOC100043943, LOC385316, EG434729, LOC100043944, LOC628008, 4930402K13Rik, EG436193
Downstream geneXk, 1700012L04Rik, EG628040, LOC100042834, LOC100042839, Rp23-423l11.5, Cybb, EG333452, LOC100042867, Dynlt3, 1700054O13Rik, 4930557A04Rik, Sytl5, LOC436194, Srpx, Rpgr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161I06.T7 (MSMg01no161_i06.b1)MSMg01-161I06.TJ (MSMg01no161_i06.g1)
ACCAG360899AG360900
length1,2491,244
length of high quality
(start - end)
381 (77 - 457)214 (119 - 332)
definitionCHROMAT_FILE: MSMg01no161_i06.b1 PHD_FILE: MSMg01no161_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:12 2005CHROMAT_FILE: MSMg01no161_i06.g1 PHD_FILE: MSMg01no161_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGGCATTGGGCGCTAAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTGGAGAGGAGAGATGCCTGTAGCTCGTTGATAGATGGAGATAGCAGA
AGGAAAAGAGGGGACTACAGAGGCAAGGGCCTGAGCACACAGCTAAATGG
GGATTCTGTGCAGCTGCTTTCCATTGCTGGGGGTAAAATGGGATCAGAAG
CAGTTTCCATGGAGAATGGTCCTCCTACCTGACAACAGAACTGCATATGA
GAAAGGGAAGCCTGCAAACTGCTCTTCTGTGATCAAGAACATATTGTGTC
ACTAAGAAATATTGTTCAATTAGCAGGTTTCAAAGTTTTCTGCTAAGGTT
CCTGAATTAGGACTGTATAACGTCAAAATAAAATGGCTCAGTTAAATTTA
TTGTTTTTGTCTGCAAATGTCCTGATCTCCCCCGAATGGTGGCTTTTAAT
TTTTTTTTTCCCCCCCCCCCCCACATCCCCTGTTTCTATCAAAAAAAGAT
GAGGCCTATTGGGGCAGCCATAGGCATCCCGCTCTACTTCTGACTACAGC
ATACTTGCAACTCCTTTGTAAACTAAGCTTCAACCTAAGATTCCAAAAGA
ATAAAAGGTTCTAATGAATTATTTGTAGCTTAATCTAATTTTGCAGTTCT
AGGGAGTAAACAGGAGGACTTGCATGTACTATATAGAATTCCCAGCCCCA
AGTATTTTTAAATTGCTCAGAATTCATTTGTAAATTAAGTTCCCTAAGCC
TCATCCAAATTCACAGAGTAACCATGTTATCCCTACACTTAACATTCCGT
GCCTCTGTTGGAGTTTTTCCCCTACCTGGGACTGCCCTGTCTGTCCCACT
CCCCGACTTCCCTTATACAATTAGTGTCTTTCCCTGTTGCTTTGAAGGAA
TATCCTGACTAAAGAAACTGAAGGGAGGAACCGTTTATTCACCTCCCAGT
TTCAAAGTTTTTTCCCCATTCCGTGGGGGAAAATCCCCTCCCGGGTATGT
TGTAACATATATTCCCTTGGTACCTCCAAATCTCGTAATCCATATAAAAA
TGGTTGGTTCCTTCCTATTTCCTCCTCTCTGTCTTATTACAGCCTAACCA
TTTCCTTCTCCTAAAAAGGTCCTCCCCTCACATAGTCCAACCAATGTGTT
CTATTGATATTTATATATTATCTGTCCTCCCCCATTCATAATAACTCTTT
GTATTTATCTAGCGTGAATGATTTTTCTTCCATTCTCTCTCTATTAACA
NNNTTATCATGTGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAGTTCATCAGCTTCAAGCATTTTCCAG
GACATTGGAACACTGTTGGAGGCTTACCTATGTCAAAATTCAATCTTTAA
AGGCACTTATAATAAAATAATACTAAAAGAGAGCACGTGGATTCATACAT
CAAACTAACGCAGGGATAGGGTATGAGTATACGGGTTATGAGAATGCCTG
GTTCCAGGAGGTTGAGTTTCCTTGAAACTCCCTGCCTCATGAGTGCTTCC
AGGCCTCTCGGCCTGCCAAGCAAACGTCACTGGAGTGTGCATAGCATTCT
CCCCCTTTCATTTTTATTTTTCAGCCGAAGTTCCAGAATGTCCTGCTTTG
TCTTATCTATAGATCTCAAAAGTACTCTAAAGATGAGTGGAAACACAAGG
ATTTTTTTTTCCCCCCCCCCCCCTAATAATAGCAAGTAGGTAAAAAAAAG
GAACCCAATCCAGGGGATTCAATGCACTTAGGTTATTTTTTTTTTTTTAA
ATCTCTGGCCAATTCATCAATGTTCCAAGTGTCCAAGTGACTTTTGCTAA
TATCTGAAATTTCTGGCTTTAACTGTTCCAAATCATGAGAAATATCAGTA
TCTCTCCATACTCCCTGCAAATGAGCTTTAGCCCTTACCCAATCAAGGGT
TGTATTATAAGGTAATAGCGGGACACATATATATTGGAATGAAGCATGAG
ATTTAGTAGCTAACCTAACCTTAATATTTGCAATATCTTGCCCTATTGCC
AGCACCACTACTTCTAGGGCGTTAACCTTTGCCTCCCATTTTTAACCTAT
AATATGCAGCTCTGACAAAGCTACGGAAATATTCCTATGCTTATCATTAA
CAAAATGAACCATATGCACCTGCTGAATAAAGGTTGTGGTAAAATCCTTT
TCAAAGTTGGCATTCCCAAATTTTTAACCCAAGGATCTTTTCTCAACTCT
CTTAAGGGGAAAAAACAAAACCCGGTTTCTTTTAACATAATCTTAACACG
CTAATCCCTTATTTAATTTTGGTCTTTCCCCATTTATTTATTTTCCATCA
ATTTATTGTATTATATAAAAACTTTCTCGGTTGTCGCCCCCTCTCTTCTT
TAATTCTCTTCTCACTATCCCTCTATGGGTGGTGGTACTCAATTCTTTAT
ATTTCTTTGGTATCTATCTCTCTTGTCTTCTCAACATCTATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_i06.b1 MSMg01no161_i06.b1 CHROMAT_FILE:
MSMg01no161_i06.b1 PHD_FILE: MSMg01no161_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:12 2005
         (381 letters)



>mm_chrX_8789529_8790309
          Length = 781

 Score =  667 bits (345), Expect = 0.0
 Identities = 369/381 (96%), Gaps = 8/381 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcgttgatagatggagatagcagaaggaaaagaggggactacagaggcaagggcctgagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 577 tcgttgatagatggagatagcagaaggaaaagaggggactacagaggcaagggtctgagc 518

                                                                       
Query: 61  acacagctaaatggggattctgtgcagctgctttccattgctgggggtaaaatgggatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 517 acacagctaaatggggattctgtgcagctgctttccattgctgggggtaaaatgggatcc 458

                                                                       
Query: 121 gaagcagtttccatggagaatggtcctcctacctgacaacagaactgcatatgagaaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gaagcagtttccatggagaatggtcctcctacctgacaacagaactgcatatgagaaagg 398

                                                                       
Query: 181 gaagcctgcaaactgctcttctgtgatcaagaacatattgtgtcactaagaaatattgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gaagcctgcaaactgctcttctgtgatcaagaacatattgtgtcactaagaaatattgtt 338

                                                                       
Query: 241 caattagcaggtttcaaagttttctgctaaggttcctgaattaggactgtataacgtcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 caattagcaggtttcaaagttttctgctaaggttcctgaattaggactgtataacgtcaa 278

                                                                       
Query: 301 aataaaatggctcagttaaatttattg----tttttgtctgcaaatgtcctgatctcccc 356
           ||||||||||||||||||||||||  |        |||||||||||||||||||||||||
Sbjct: 277 aataaaatggctcagttaaatttaaagccca----tgtctgcaaatgtcctgatctcccc 222

                                
Query: 357 cgaatggtggcttttaatttt 377
           |||||||||||||||||||||
Sbjct: 221 cgaatggtggcttttaatttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)