BAC Information

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BAC

Clone NameMSMg01-163B10
ChromosomeX (Build37)
Map Location 34,160,678 - 34,160,995
singlet/doubletsinglet
Overlap geneB230333C21Rik
Upstream geneEG665074, EG210457, Dock11, Il13ra1, Zcchc12, LOC547166, Lonrf3, EG621901, Pgrmc1
Downstream geneLOC621983, Slc25a43, Slc25a5, C330007P06Rik, Ube2a, Nkrf, Sept6, Ankrd58, Rpl39, Upf3b, 2610020O08Rik, Akap14, Ndufa1, Rnf113a1, Gm9, Rhox1, Rhox2, Rhox3, Rhox4a, LOC100039913, Rhox4b, LOC100039948, Rhox4c, EG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e, LOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163B10.T7 (MSMg01no163_b10.b1)MSMg01-163B10.TJ (MSMg01no163_b10.g1)
ACCAG362007AG362008
length730733
length of high quality
(start - end)
322 (50 - 371)284 (80 - 363)
definitionCHROMAT_FILE: MSMg01no163_b10.b1 PHD_FILE: MSMg01no163_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:36 2005CHROMAT_FILE: MSMg01no163_b10.g1 PHD_FILE: MSMg01no163_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATAAAAGCCCTCATGCCTACAACAATATATTAATGCACAAG
ATAGCAAAAACGAGTCTGGTTTTCCTCCTTGGGCAAGGCATGAATTTATC
AAACTTCTGTTAATACATTTTCAAGTTCTCTTTGCTCAGTAGCATATGCT
ATACAAATATGCTGGTATTTTACTGTAAGACTTTTGGTTCTTGTCTCAAA
TCGCTGACTTGGTTTTTGTATACATCATGTTATTTCCATTATAATGCACT
TACTATATTTCTAGTGATTCACTTTAACTAACTTACTGCATTAATAGCTT
CTTAATTGAAATGAATATTTTACTACTACAGTAGGATGCATTGAACTTAG
CAACTGAAGCACAGCACACCAACTACATCATATTGTTTAATTTCACAGCT
ATAGAAAAACGTTTGCCTTTAAAAATACAATCAAGATGAGACTACATAGT
TTATGAACAGTGAAATACTAGGAAACAGTGGATGAAGAAATAAGGTCATT
TTTCATCCATGACCATAATTTTGTCTTTAGAAACCTGGAAGAAAATATTG
TGGTAAATCTAGTCATTTAGTTGTTTCTTCAATCTCATGAGTTACTGAAA
TAAGTGGTACTAACGAATCAAAGTTCTTTTCTGGGCCAAGGTAGGCAACA
ACGGCCACATAGAGGATTTCCTCATATAAG
CATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAAGGAAAT
GCAAATCAAAGCAACCCTGAGATTCCACCTCATACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAATCTTGTACAACCACTCTG
GAAATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACAACCGGAGG
ATCCAGCAATACTTCTCCTGGCCCTACACCCAGAAGATGTCCCAACCGGT
AAGAAGGACACATGCTCCACTATGTTCATAGCAGCTTTATTTATAATAGC
CAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGATACATTTAAACAATGGAGAACTACTCAGCTATTAAAAAGAAT
GAATTCATGAATTTTTTTAGGCAAATAGATGGACCTGCAGGGCATCATCC
TGAGTGAGGTAACCCAATCACAAAAGAACTCACATGATAAGTATTCACTG
GTAGGTGGATATTAGCCCAGAAACTTAGACTACCCAAGATACAAAATACA
ATTTGCAAAACACATGGAACTCANGAAGAACGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_b10.b1 MSMg01no163_b10.b1 CHROMAT_FILE:
MSMg01no163_b10.b1 PHD_FILE: MSMg01no163_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:36 2005
         (322 letters)



>mm_chrX_34160474_34161195
          Length = 722

 Score =  584 bits (302), Expect = e-171
 Identities = 314/318 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataaaagccctcatgcctacaacaatatattaatgcacaagatagcaaaaacga 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 522 gaattcataaaagtcctcatgcctacaacaatatattaatgcacaagatagcaaaaatga 463

                                                                       
Query: 65  gtctggttttcctccttgggcaaggcatgaatttatcaaacttctgttaatacattttca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gtctggttttcctccttgggcaaggcatgaatttatcaaacttctgttaatacattttca 403

                                                                       
Query: 125 agttctctttgctcagtagcatatgctatacaaatatgctggtattttactgtaagactt 184
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 agttttctttgctcagtagcatatgctatacaaatatgctggtattttactgtaagactt 343

                                                                       
Query: 185 ttggttcttgtctcaaatcgctgacttggtttttgtatacatcatgttatttccattata 244
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 342 ttggttcttgtctcaaatcgctgacttggtttttgtatacaccatgttatttccattata 283

                                                                       
Query: 245 atgcacttactatatttctagtgattcactttaactaacttactgcattaatagcttctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 atgcacttactatatttctagtgattcactttaactaacttactgcattaatagcttctt 223

                             
Query: 305 aattgaaatgaatatttt 322
           ||||||||||||||||||
Sbjct: 222 aattgaaatgaatatttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)