BAC Information

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BAC

Clone NameMSMg01-163D10
ChromosomeX (Build37)
Map Location 125,652,013 - 125,652,304
singlet/doubletsinglet
Overlap geneLOC100040550
Upstream geneLOC100040516, Mdm4-ps, EG237030, LOC100040538
Downstream geneLOC100040562, LOC100040570, LOC669120, Diap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163D10.T7 (MSMg01no163_d10.b1)MSMg01-163D10.TJ (MSMg01no163_d10.g1)
ACCAG362095AG362096
length723722
length of high quality
(start - end)
672 (52 - 723)292 (80 - 371)
definitionCHROMAT_FILE: MSMg01no163_d10.b1 PHD_FILE: MSMg01no163_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:46 2005CHROMAT_FILE: MSMg01no163_d10.g1 PHD_FILE: MSMg01no163_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAGACCCATACCTAAACATAATAAAAGCAATATACAGCA
AAATAGTAGCCAACATCAAACTAAATGGAGAGAAACTTGAAACAATCTCA
CTAAAATCAGGGACTGGAAAAGGCTGCCCTTTCTCTCCCTACTTATTCAA
TAGAGTACTTGAAGTCCTAGCCAGAGAGCAATTAGAGAACAAATGGAGAC
CAAAAGGATAAAACTGGTTAGGAAGAAGTCAAAATATCACTCTTTGCAGA
TGATATGATACTATATATAAGTGATCCCAAAAATTTCACCAGAGAACTCC
TAAATCTGATAAACAACTTCAGTAACATAGCTGGATATAAAATTAACTCA
AATAAATAAATCAGTTGCCTTTCTCTACATAATAGATCAACAGGCTGAGA
AATAAATTAGGGAAACAACACCCTTCACAATAGTCACAAATAATATAAAA
TACCTTGGCATGATTCTAAGTAAGGAAGTGAAAGATCTGTATGATAACAA
CTTCAAGTCTCTGAAGAAATAATTCAAAGATCTCAGACGATGGAAAGATC
TCCCATGCTCATGAATTGGCAAGATTAATATACTAAAAATCGATATCTTG
TCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCA
ATTCTTCACAGAGTTAGAAAGGG
NTTCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACTGCTCAGAATAATTGGA
AGAGAACGTTCGAAGTAAAGACAGAGTGGATTTATAGTGAAGATTTAAAC
CTGCCAAAATTCATGTAGATATAAATGCTTGCCACAAATTATTAAGGAAA
CAAAGCAGACCTGTTCTCAGTGACTCTTTAGATACATGGTATGCACTAAT
TCATAACAATGAGTAAAACTAACTATTTCAGACATCAGAAATGAATGAAA
AACTAGAAGTGTCAATAAAATTAAATTAATGGTATAGGATGTTTTTAGTA
TTTATAATGTATGTTGTGTGAGACACACAAATGATACAAACATCAATTTT
TGAAGTATTCATAATTTTTCTCAAGCTTAAGATAAAATATGAACATATAT
AAAATTGACAACTCAAATGTGAGTATGTATTACAGTAGCAGGATGAACTA
TATTTTATGTTCCTTATTATCCAAAGTGGATCTGGACCAAGAACAATGCG
AAGGAATGAGAATTAGTTCAGAAGTAATGGTCCTTGGAATACAATCTGTC
ATCTTATGTATTATTATTATTTTTTATTTTAAAATACTTCTTGCTTTAAA
CTTTGTTTTTAAAAATTTATGAATGTGCCATCTTAGGCATGTTACACAAC
TCACTCCAACATACTTTTTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_d10.g1 MSMg01no163_d10.g1 CHROMAT_FILE:
MSMg01no163_d10.g1 PHD_FILE: MSMg01no163_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:46 2005
         (292 letters)



>mm_chrX_125651813_125652504
          Length = 692

 Score =  557 bits (288), Expect = e-163
 Identities = 291/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttactgctcagaataattggaagagaacgttcgaagtaaagacagagtggatttatagtg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 492 ttactgctcagaataattggaagagaacgttcgaagtaaagacagagtggatttgtagtg 433

                                                                       
Query: 61  aagatttaaacctgccaaaattcatgtagatataaatgcttgccacaaattattaaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aagatttaaacctgccaaaattcatgtagatataaatgcttgccacaaattattaaggaa 373

                                                                       
Query: 121 acaaagcagacctgttctcagtgactctttagatacatggtatgcactaattcataacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 acaaagcagacctgttctcagtgactctttagatacatggtatgcactaattcataacaa 313

                                                                       
Query: 181 tgagtaaaactaactatttcagacatcagaaatgaatgaaaaactagaagtgtcaataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgagtaaaactaactatttcagacatcagaaatgaatgaaaaactagaagtgtcaataaa 253

                                                               
Query: 241 attaaattaatggtataggatgtttttagtatttataatgtatgttgtgtga 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 attaaattaatggtataggatgtttttagtatttataatgtatgttgtgtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)