BAC Information

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BAC

Clone NameMSMg01-164N03
ChromosomeX (Build37)
Map Location 93,117,708 - 93,118,012
singlet/doubletsinglet
Overlap geneA130028J20Rik
Upstream geneGm371, 9630042H07Rik, Arhgef9, LOC619688, LOC100042189, 2810002O09Rik, Asb12, LOC668202, AK129302, 1700010D01Rik
Downstream geneLas1l, Msn, Psmb7-ps1, LOC668221, Vsig4, B230358A15Rik, Heph, Gpr165, LOC675824, LOC668234
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164N03.T7 (MSMg01no164_n03.b1)MSMg01-164N03.TJ (MSMg01no164_n03.g1)
ACCAG363173AG363174
length717722
length of high quality
(start - end)
311 (52 - 362)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no164_n03.b1 PHD_FILE: MSMg01no164_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:46 2005CHROMAT_FILE: MSMg01no164_n03.g1 PHD_FILE: MSMg01no164_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCAATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCCTGCAGGGGAATACAACTTGCTGTGGATTGGTTTCTA
GACAAAGGCCATAAAGATATCACGGTATTTGTACCAGCATGGAGAAAGGA
GCAATCCCGCCCCGATGCACCAATTACAGGTATTATTTTAAATTAAAATT
AAAAAAAAAACTTTTCCTCGAGAGTCAAAGCGAAAAAGCTAGTTTGGAGA
GAGGCAGATGGTCCCAACTTAGATAATTGCTTTTCTAAGTTAAGTATGCT
TAAAATGTCTTTTATAAAAATGGTCCATATGAGACCATCCTTGTTTTGTG
GTATGTGATAGCTAAATATTTTTTACCCCCCCCCCCCTACAAATCATAAA
AAAGAATGTTATTCTTATGGAAACCCCCACACACCTGCAATCCCAGCACT
CAATAGACTTAGGCAAGATGATAGCGAGTTTGAGGCTAACCTGCTGTACA
TAGTGAGTAACATGGCAGACTGATCACAGATTTTAGACCGGGAACACCAC
ATGGTTATAACTATAATTGACCTTTTTCACGAAATTAAAGGCTACATGAT
ATGCAGGCCGACTTATTTTACATCCCATAAACCACTACGGAGTTTTCAAG
GTACGCATAGCAGAGGAGAAAATATTTTTAGACATGGAAAGCCATTATTG
TTTGATACCAGATTTGN
CATTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGGCTCTTGTTTTTTTGCACT
TTGGCTAGTTGTAGGTCTCTGTGCCAATCACCATCTATACCAAAGAGAAA
GAATCTTTGATGAAAGTCAAGAGATACATTAATCTCTGGATATGACAATT
ATTGTGTTGAGGTATGTTTCACTCATCCCTAGTCTCTCTAGGGCTATTTT
CATCAAGGAATGTTGGATTTTGTCAAAGGACTTTCTTGTATCAAGACGAT
CATGTGCTTTCTATCCTTGACTATTTATGTGAATTGCATTTTCCCTTTGG
TTTATAGATGAAGTACTTTCCCCCCCCCTCCGCCACGAAGTCAGTTTCCG
TGGTTTACTATACCGAGCCCCCCCAAATGAAAAACACAGAGGACTGAGTT
TCTATTTCCAGCACCCATATGGTACCTAACAAACACCTGTAACTCCAAGG
GAGCCATCACCTTCTTCTAGCCTCTGCCAGCATATATATATATATAGTCT
GAACCCCCACAGACATAACACATATCTAAAATGTAAAAACTAATAAATTA
GCCCGTAAGAACCAAAGTCATATTTTAAGCTTTAGTTGCCGCGCCCAAGA
GATCCATTAAACAAAGATGTCTCTCACCTGTTAGCCCCTTGCCCAAGGAC
AGATACTCCCTGAGATGTTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_n03.b1 MSMg01no164_n03.b1 CHROMAT_FILE:
MSMg01no164_n03.b1 PHD_FILE: MSMg01no164_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:46 2005
         (311 letters)



>mm_chrX_93117504_93118214
          Length = 711

 Score =  584 bits (302), Expect = e-171
 Identities = 305/306 (99%), Gaps = 1/306 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcctgcaggggaatacaacttgctgtggattggtttctagacaaaggccataaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcctgcaggggaatacaacttgctgtggattggtttctagacaaaggccataaa 264

                                                                       
Query: 65  gatatcacggtatttgtaccagcatggagaaaggagcaatcccgccccgatgcaccaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatatcacggtatttgtaccagcatggagaaaggagcaatcccgccccgatgcaccaatt 324

                                                                       
Query: 125 acaggtattattttaaattaaaattaaaaaaaaaacttttcctcgagagtcaaagcgaaa 184
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 325 acaggtattattttaaattaaaatt-aaaaaaaaacttttcctcgagagtcaaagcgaaa 383

                                                                       
Query: 185 aagctagtttggagagaggcagatggtcccaacttagataattgcttttctaagttaagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagctagtttggagagaggcagatggtcccaacttagataattgcttttctaagttaagt 443

                                                                       
Query: 245 atgcttaaaatgtcttttataaaaatggtccatatgagaccatccttgttttgtggtatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atgcttaaaatgtcttttataaaaatggtccatatgagaccatccttgttttgtggtatg 503

                 
Query: 305 tgatag 310
           ||||||
Sbjct: 504 tgatag 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)