BAC Information

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BAC

Clone NameMSMg01-164N07
ChromosomeX (Build37)
Map Location 89,936,021 - 90,024,327
singlet/doubletdoublet
Overlap genenone
Upstream geneMageb5, LOC673766, LOC633484, LOC674396, EG278087, Mageb1, EG236892, EG236893, Mageb18, EG436259, EG668061, EG546347, LOC629568
Downstream geneLOC100042663, Rp23-438h3.2, Arx, Pola1, EG629581, Pcyt1b, Pdk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164N07.T7 (MSMg01no164_n07.b1)MSMg01-164N07.TJ (MSMg01no164_n07.g1)
ACCAG363181AG363182
length723729
length of high quality
(start - end)
320 (51 - 370)632 (80 - 711)
definitionCHROMAT_FILE: MSMg01no164_n07.b1 PHD_FILE: MSMg01no164_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:47 2005CHROMAT_FILE: MSMg01no164_n07.g1 PHD_FILE: MSMg01no164_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,936,021 - 89,936,332)(90,023,696 - 90,024,327)
sequence
CATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGCAAAATCTGCATTTTCATATTGCAAAGGGATGAATCTT
ATGTAGTGATTAAAGTCCCCAAAATGTCACAATGCTACATTGAAATAACC
TGAAGTGGAAACATGGTGCTTATATTTTGTTTTGTTTCATATGGACAATT
TTAGTTATTATTTTAATTTTGTGTACTTATAGGGTATAGTGTGGTATTTT
GACACAGGCATACAACATTTAATGATTAGATTGGGTGAATTTCCATGCAA
TTACATTTTGTTGCATATTTGAAAATGGTAAATTTCTATAAATAATCTAA
AAAGAATCAATCTGTGTTTATAGATGGTCACCTTTCATGAGCCAAAAAAA
TAGTAACTAGAAGCCACAAAAGAACCACATATTTTTATATCTTTTCTGAG
GTTATCACAAGGTATCAGCTTACCTCAGTACATGAAATTGTATCAGTACG
AAATCATTCCTTTTCTTTATCTCCTTCAGATGGGGGGGCTGGCTTTATAT
TTATGTTTCTCTTTTGAGAGCATCTCATACTACCTTCCTATACCAAGGAC
ACTAGGACATACGGATAAAGCCTCTGTGTATATACCAGCTCAACTTCTCC
ATGTTCAATGAGTTGTGTAGCATGTGTCTTCAGTAATGAGGCTTTGTCAT
TACTTTGTGTAGAGCACCCTATA
CTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACATGTGGTTGACTTTACCA
TGTGGAATGAATACTTGATTTCTATTACCACCTTCATTAAGAAGTATCAT
TTACAAATCAAGCAGTAGATACTTATTAGATGTTTTTGGCTCAACATAAA
TGATGTATAATCATCAGAAAAGAGGGAAGACCATTAGCTCATTGTCATTA
TTTATAGTCTCATTAACTCATTACCATTATTTATGAGAAATATATTATAG
AGCAGTGAGAAATGTACTGGCAGGTAAAGGGATAGTCTCTCTAGTTAAGT
GGTCTTTCATATAAATTCTAATAAACAGGGAAGAAAGGCATTTGTGAAAG
GTTTTGTTTCAAAGGGGAAGGTCCTTGTGAACAAAGATTTTTTTTTCTCT
TAAAAATTTTTCTGCTAAACAAAAGAACCCCAAACCAGAAAAGAGTCCAG
AAATAGAAAGTAAGAGACATTTAGCAGGAGCTTGGGTTGGGTAGCTTCAT
GGTACACTGAACACCTAGTTGCCTACAGGGTAAGAGGCCTTGGGTTTGAG
TCCAGACACATAAAACTCCCAAATCACCAACTAAAATAGATTGTTTGTCA
AGATTCTTTGGTAGAGGATGAAATGAGAGTATTCAACAAAACTCATGAGN
TTTAAGTTAAAGCGAAACAATACATCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_n07.b1 MSMg01no164_n07.b1 CHROMAT_FILE:
MSMg01no164_n07.b1 PHD_FILE: MSMg01no164_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:47 2005
         (320 letters)



>mm_chrX_89935817_89936536
          Length = 720

 Score =  588 bits (304), Expect = e-172
 Identities = 310/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcaaaatctgcattttcatattgcaaagggatgaatcttatgtagtgattaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcaaaatctgcattttcatattgcaaagggatgaatcttatgtagtgattaaa 264

                                                                       
Query: 65  gtccccaaaatgtcacaatgctacattgaaataacctgaagtggaaacatggtgcttata 124
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtccccaaaatgttagaatgctacattgaaataacctgaagtggaaacatggtgcttata 324

                                                                       
Query: 125 ttttgttttgtttcatatggacaattttagttattattttaattttgtgtacttataggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttgttttgtttcatatggacaattttagttattattttaattttgtgtacttataggg 384

                                                                       
Query: 185 tatagtgtggtattttgacacaggcatacaacatttaatgattagattgggtgaatttcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatagtgtggtattttgacacaggcatacaacatttaatgattagattgggtgaatttcc 444

                                                                       
Query: 245 atgcaattacattttgttgcatatttgaaaatggtaaatttctataaataatctaaaaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgcaattacattttgttgcatatttgaaaatggtaaatttctataaataatctaaaaag 504

                       
Query: 305 aatcaatctgtg 316
           ||||||||||||
Sbjct: 505 aatcaatctgtg 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no164_n07.g1 MSMg01no164_n07.g1 CHROMAT_FILE:
MSMg01no164_n07.g1 PHD_FILE: MSMg01no164_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:47 2005
         (632 letters)



>mm_chrX_90023496_90024527
          Length = 1032

 Score = 1170 bits (605), Expect = 0.0
 Identities = 625/632 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacatgtggttgactttaccatgtggaatgaatacttgatttctattaccaccttcatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 832 aacatgtggttgactttaccatgtggaatgaatacttgatttctattattaccttcatta 773

                                                                       
Query: 61  agaagtatcatttacaaatcaagcagtagatacttattagatgtttttggctcaacataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 agaagtatcatttacaaatcaagcagtagatacttattagatgtttttggctcaacataa 713

                                                                       
Query: 121 atgatgtataatcatcagaaaagagggaagaccattagctcattgtcattatttatagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 atgatgtataatcatcagaaaagagggaagaccattagctcattgtcattatttatagtc 653

                                                                       
Query: 181 tcattaactcattaccattatttatgagaaatatattatagagcagtgagaaatgtactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 652 tcattaactcattaccattatttatgagaaatatattatagagcagtgagaaatgtacta 593

                                                                       
Query: 241 gcaggtaaagggatagtctctctagttaagtggtctttcatataaattctaataaacagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gcaggtaaagggatagtctctctagttaagtggtctttcatataaattctaataaacagg 533

                                                                       
Query: 301 gaagaaaggcatttgtgaaaggttttgtttcaaaggggaaggtccttgtgaacaaagatt 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 532 gaagaaaggcatttgtgaaaggttttgtttcaaaggggaaggtctttgtgaacaaagatt 473

                                                                       
Query: 361 tttttttctcttaaaaatttttctgctaaacaaaagaaccccaaaccagaaaagagtcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tttttttctcttaaaaatttttctgctaaacaaaagaaccccaaaccagaaaagagtcca 413

                                                                       
Query: 421 gaaatagaaagtaagagacatttagcaggagcttgggttgggtagcttcatggtacactg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gaaatagaaagtaagagacatttagcaggagcttgggttgggtagcttcatggtacactg 353

                                                                       
Query: 481 aacacctagttgcctacagggtaagaggccttgggtttgagtccagacacataaaactcc 540
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 352 aacacctagttgcctacagggtaagaggccttgggtttgagttcagacacataaaactcc 293

                                                                       
Query: 541 caaatcaccaactaaaatagattgtttgtcaagattctttggtagaggatgaaatgagag 600
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 292 caaatcaccaactaaaatagattatttgtcaagattctttggtagaggatgaaatgagag 233

                                           
Query: 601 tattcaacaaaactcatgagntttaagttaaa 632
           |||||||||||||||||||| |||||||||||
Sbjct: 232 tattcaacaaaactcatgagttttaagttaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)