BAC Information

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BAC

Clone NameMSMg01-165H01
ChromosomeX (Build37)
Map Location 143,074,842 - 143,075,098
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039313, LOC623697, LOC623731, LOC237096, LOC100039558, EG666730
Downstream geneEG245663, Htr2c, Il13ra2, V1rb10, Lrch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165H01.T7 (MSMg01no165_h01.b1)MSMg01-165H01.TJ (MSMg01no165_h01.g1)
ACCAG363601AG363602
length745777
length of high quality
(start - end)
322 (39 - 360)259 (72 - 330)
definitionCHROMAT_FILE: MSMg01no165_h01.b1 PHD_FILE: MSMg01no165_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:36 2005CHROMAT_FILE: MSMg01no165_h01.g1 PHD_FILE: MSMg01no165_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAATT
CCTGATCTTCCAAGACTTTTATCTTGAATTGGTGTTGGATTTTGTCAAAT
GCTTTCTCTGAATCTAACAAGATGATGATCATGTGGTTTTTGTCTTTGAG
TTTGTTTATATAGTGGATTATGTTAATGGATTTCATATATTAAACTATCC
CTGCATCCCTGGAATGAAACCTAGTTGGTGACAATGGATGATTGTTTTGA
TGTGTTGTTGAATTCAGTTAGCAAGAATTTTATTGAGTATTTTTGCATCG
ATATTCATAAGGGAAATTGTTCTGAAGTTCTCTATCTTTGTTGGGTCTTT
CTGTGGTTTACGTATCAGAGTAATTGTGGCTTCATAGAAAGAATTGGGCA
GACTACCTTCCGCCCCTATTTTGTGGAATAGTTTGTGAAGAACTGGGATT
AGATCTTCTTTGAAGGTCTGACTAAACTCTGCACTAAACCCATTTCGCCC
TGATATTTTTTTCGATTTGTCAGTCCCATAATGACTGATTTCTACTTTCT
TTCACTCACTTTGTACTGCTTATCCTATTCTGACTGATCCTGCTCTTAAT
TTTTGTACTCTCGTTATCTCGCCTAATATATTTGTATATTTTCTACTCAT
TTTCCCCTTATTCTTTATTTCCCACTACCTCCTCTCCCCCTCCCCATTTT
TCACCCCCCCCTTTCCCCTTTCACCCCTTTATTCCCTCTCCCTTN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATCTTCACATTCTCATTTACACATCAATT
TTCTAAAAGAACAAATGAGACTCATACTAATCTCTAAGAAACAGAACTAA
ATGGCTGCTAGGAAATAAAGAAGGATTTTTTTTTGCTATTATTATTTCCT
ATGTTTTCATTTTTTTGCACTTTGAATTATAAGTTTATGCTATCTACATT
AAAACATTATAATTTAATTTCAAAAGAGAATTGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTTNTNNTTTTTTTTTTTTNTTT
TTTTTTTTTTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTT
TTTNTTTTTTTTCCCCCCCCCTGTGTGTTCGCTTTTCTTTTTTTTCCTTC
TCTCCCTCTTCTTCGTTTCTCCTTCCCTCTCTTCTTCTCTGCCTGTCCTC
CCTTCTTCGCTCTCTCTCCCCGCGTTTCCTCCGTCCCCCCTCCTTCCCTT
TGCGTCCCCGCCGTCCCCTGCCTTTTTCTGTCCTCCTTCTCTTTTGTTCT
TGTCGCGTCGCCGTCCTCGGCCGCGTCGCTCTCGCCTGTTCCTTGTCCTC
GCTTGCTCCTGTTTTCTTTTTCGTTCTCTGTTCCTTCTTTTCTCCTTCTT
TTCCTCTTCTCTTCCCCTTCCCCTGCCCTCCTTCTTCTCGCCCTCGTTCC
GTTTTTTTCGCCTCCCTTCTCCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_h01.g1 MSMg01no165_h01.g1 CHROMAT_FILE:
MSMg01no165_h01.g1 PHD_FILE: MSMg01no165_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:36 2005
         (259 letters)



>mm_chrX_143074643_143075299
          Length = 657

 Score =  482 bits (249), Expect = e-140
 Identities = 255/257 (99%), Gaps = 1/257 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcttcacattctcatttacacatcaattttctaaaagaacaaatgagactcatactaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 atcttcacattctcatttacacatcaattttctaaaagaacaaatgagactcatactaat 397

                                                                       
Query: 61  ctctaagaaacagaactaaatggctgctaggaaataaagaagga-tttttttttgctatt 119
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 396 ctctaagaaacagaactaaatggctgctaggaaataaagaaggattttttttttgctatt 337

                                                                       
Query: 120 attatttcctatgttttcatttttttgcactttgaattataagtttatgctatctacatt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 336 attatttcctatgttttcatttttttgcactttgaattataagtttatgctatctacgtt 277

                                                                       
Query: 180 aaaacattataatttaatttcaaaagagaattgtagtagtagtagtagtagtagtagtag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaacattataatttaatttcaaaagagaattgtagtagtagtagtagtagtagtagtag 217

                            
Query: 240 tagtagtagtagtagta 256
           |||||||||||||||||
Sbjct: 216 tagtagtagtagtagta 200


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 657
Length adjustment: 9
Effective length of query: 250
Effective length of database: 648
Effective search space:   162000
Effective search space used:   162000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)