Query= MSMg01no166_d08.b1 MSMg01no166_d08.b1 CHROMAT_FILE:
MSMg01no166_d08.b1 PHD_FILE: MSMg01no166_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:38 2005
(574 letters)
>mm_chrX_165320108_165321081
Length = 974
Score = 1027 bits (531), Expect = 0.0
Identities = 557/571 (97%), Gaps = 10/571 (1%)
Strand = Plus / Plus
Query: 6 ggaattccatgtcttacatccaggacacaacataatctgagctctagtgtgcttgagaat 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattccatgtcttacatccaggacacaacataatctgagctctagtgtgcttgagaat 265
Query: 66 gccttcccctaggactctgcacacagccttgttgattgtctccacttagtgcttgcactt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gccttcccctaggactctgcacacagccttgttgattgtctccacttagtgcttgcactt 325
Query: 126 tccattggcaagtattctgtgtctgacattatgaagttgctgtggcaacctaggcttcac 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tccattggcaagtattctgtgtctgacattatgaagttgctgtggcaacctaggcttcac 385
Query: 186 cttcaaagttacatgcatctgttctctggggcttccctgcagggccatctgacaccatta 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cttcaaagttacatgcatctgttctctggggcttccctgcagggccatctgacaccatta 445
Query: 246 cacattgcatcaactcacaggttttattctctagaaccttggggaaagccattggtatcc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cacattgcatcaactcacaggttttattctctagaaccttggggaaagccattggtatcc 505
Query: 306 cataactcttgaattctgtatacctcatcactccacgacaccaaattaatgtgccagctt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cataactcttgaattctgtatacctcatcactccacgacaccaaattaatgtgccagctt 565
Query: 366 gctatattc-----cccccccctcttgtacatccaagtgactgtgatgctagcattagga 420
|| |||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gcaatattcttgggccc-----tcttgtacatccaagtgactgtgatgctagcattagga 620
Query: 421 aactattttcctaggctgctatttctcagaagggatcccaggcagcactcttttcaaatg 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaccattttcctaggctgctatttctcagaagggatcccaggcagcactcttttcaaatg 680
Query: 481 tattaagtccctcaaatttacagcctgtttcttccagctctcctttctggtttctcccag 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 681 tattaagtccctcaaatttacagcctgtttcttccagttctcctttctggtttctcccag 740
Query: 541 cttttctttaattgcgttaatctctttgcca 571
|||||||||||||| ||||||||||||||||
Sbjct: 741 cttttctttaattgtgttaatctctttgcca 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no166_d08.g1 MSMg01no166_d08.g1 CHROMAT_FILE:
MSMg01no166_d08.g1 PHD_FILE: MSMg01no166_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:38 2005
(638 letters)
>mm_chrX_165496953_165497990
Length = 1038
Score = 1203 bits (622), Expect = 0.0
Identities = 634/638 (99%)
Strand = Plus / Minus
Query: 1 aacagagtagccaaggaatcagttataggaatggcattgtacagatcaaaatattttgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 aacagagtagccaaggaatcagttataggaatggcattgtacagatcaaaatattttgtt 779
Query: 61 ctgctagcacaatgaacaccctaagggatgtttgaatagttttaatcttgagagtggact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ctgctagcacaatgaacaccctaagggatgtttgaatagttttaatcttgagagtggact 719
Query: 121 ttgtgagctatcaacctcttaactgaaatatgatggaattatattcaacaaaacactgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ttgtgagctatcaacctcttaactgaaatatgatggaattatattcaacaaaacactgaa 659
Query: 181 aatagaattatatgtgttcattgttcaaagttcttatcactggcttctgagtcaaaaatt 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aatagaactatatgtgttcattgttcaaagttcttatcactggcttctgagtcaaaaatt 599
Query: 241 aagaactcattctggtagcctattaagcagcaaaggatgtgtgcatgtttgtacgtgact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 aagaactcattctggtagcctattaagcagcaaaggatgtgtgcatgtttgtacgtgact 539
Query: 301 aggatcagggaaaatagaatggtttaatgacaaaaatgccaaccaagttcttaaagcatg 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 538 aggatcagggaaaatagaatggtttaatgacaaaaatggcaaccaagttcttaaagcatg 479
Query: 361 atatcttataagtattggtgcaagaactatataacatttggctaacaattctcctcataa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 atatcttataagtattggtgcaagaactatataacatttggctaacaattctcctcataa 419
Query: 421 ttctgcaagggtcctttaattattgttcttaataaaagtttgtttttctgtaacatagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 418 ttctgcaagggtcctttaattattgttcttaataaaagtttgtttttctgtaacagagaa 359
Query: 481 aagaaacaaagacctttccacaatcatggtcaccccatgttatagttagcagccatagag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aagaaacaaagacctttccacaatcatggtcaccccatgttatagttagcagccatagag 299
Query: 541 atttcttaagcataaaacttcacccaaatattatagaaccatctctagcattggctaatt 600
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 298 atttcttaagcataaaacttcacccaaatattatagaaccatctctagtattggctaatt 239
Query: 601 gtcctagggaatgtttcagaagtaatccaatggtcccc 638
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gtcctagggaatgtttcagaagtaatccaatggtcccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
