Query= MSMg01no166_d18.b1 MSMg01no166_d18.b1 CHROMAT_FILE:
MSMg01no166_d18.b1 PHD_FILE: MSMg01no166_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:40 2005
(560 letters)
>mm_chrX_97631589_97632548
Length = 960
Score = 1007 bits (521), Expect = 0.0
Identities = 548/561 (97%), Gaps = 8/561 (1%)
Strand = Plus / Plus
Query: 4 ggaattctacagctggcgcgaccaaagatgacaaattctcattttatggctttctcccga 63
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctacagccggcgtgaccaaagatgacaaattctcattttatggctttctcccga 263
Query: 64 atacaagagaaacaactactcctaccttggtaacccttgagatctgacatggcttgccaa 123
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 264 atacaagagaaacaactactcctaccttgggaacccttaagatctgacatggcttgccaa 323
Query: 124 ccacttcgacactgtgtctgcctttgtagacgtgagcaggatgtattaactcaggccaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccacttcgacactgtgtctgcctttgtagacgtgagcaggatgtattaactcaggccaga 383
Query: 184 ttctgatcctgctcaaggcacaaaccaagagaggatctggaagaccatgaggtatttgta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttctgatcctgctcaaggcacaaaccaagagaggatctggaagaccatgaggtatttgta 443
Query: 244 gtctgctcttttcctataaccatgactattgtgaacagtgttgtatacacctattatgga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtctgctcttttcctataaccatgactattgtgaacagtgttgtatacacctattatgga 503
Query: 304 atactagtctcaaagggacccaatttcagaagttattttcactcatttatctactgactt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atactagtctcaaagggacccaatttcagaagttattttcactcatttatctactgactt 563
Query: 364 aattcctg----cccccttttgacacattaccataccttctttcttcttaccttactaac 419
|||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aattcctgtttgc----ttttgacacattaccataccttctttcttcttaccttactaac 619
Query: 420 tggagataaggtgtttgttgtgtacatacttaggttttgaaggtacacatattttcaggt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tggagataaggtgtttgttgtgtacatacttaggttttgaaggtacacatattttcaggt 679
Query: 480 ttgaagttttaactcatccacccagtttctagttttgtgatcgtagctacctaatcttcc 539
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 680 ttgaagttttaactcatccacccagtttctagttttgtgatcgtagttacctaatcttcc 739
Query: 540 ttaacacagttcctcctagat 560
|||||||||||||||||||||
Sbjct: 740 ttaacacagttcctcctagat 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no166_d18.g1 MSMg01no166_d18.g1 CHROMAT_FILE:
MSMg01no166_d18.g1 PHD_FILE: MSMg01no166_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:40 2005
(482 letters)
>mm_chrX_97771310_97772191
Length = 882
Score = 779 bits (403), Expect = 0.0
Identities = 426/445 (95%), Gaps = 18/445 (4%)
Strand = Plus / Minus
Query: 1 actcataacttactgaatctggtggtttagctgaggcagggggatcataagttaaaggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actcataacttactgaatctggtggtttagctgaggcagggggatcataagttaaaggtc 386
Query: 61 tacctgagctgtaaagtcatgcaagcagaacaataatcagtagtcatgttaggaagatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacctgagctgtaaagtcatgcaagcagaacaataatcagtagtcatgttaggaagatga 326
Query: 121 aaatcccaaagatgatagatatccttgaatgcatggtaagtcatatagccagggatattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaatcccaaagatgatagatatccttgaatgcatggtaagtcatatagccagggatattg 266
Query: 181 ttattgttgttactactaccac------------------tattattattattattatta 222
|||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 ttattgttgttactactaccactattattattattattattattattattattattatta 206
Query: 223 tctggtggtgggatggagcgtagaggctcatgcgtgttaggcagttgctctaccactcaa 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tctggtggtgggatggagcgtagaggctcatgcgtgttaggcagttgctctaccactcaa 146
Query: 283 ctacatgtcaagcctcatgaagccaggattttaagtcatgcttcagactccagctcttca 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ctacatgtcaagcctcatgaagccaggattttaagtcatgcttcagactccagctcttca 86
Query: 343 cacacagtcattgctctgcagtgtgtctctcacttattgtcaacagacaagtgtggattg 402
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 cacagagtcattgctctgcagtgtgtctctcacttattgtcaacagacaagtgtggattg 26
Query: 403 catctaccagccacagaaacgatgt 427
|||||||||||||||||||||||||
Sbjct: 25 catctaccagccacagaaacgatgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
