BAC Information

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BAC

Clone NameMSMg01-168J11
ChromosomeX (Build37)
Map Location 99,064,447 - 99,064,686
singlet/doubletsinglet
Overlap geneEG621083
Upstream geneTex11, LOC668271, LOC100042392, Slc7a3, Snx12, Mllt7, Gm614, Il2rg, Med12, Nlgn3, LOC100042407, Gjb1, Zmym3, Nono, Itgb1bp2, LOC620837, Taf1, Ogt, LOC620865, LOC668291, Cxcr3, LOC632454, LOC668302, EG212753, 8030474K03Rik, LOC668308, LOC100042465, H3f3a-ps1
Downstream geneRgag4, LOC100042480, LOC331476, Pin4, LOC670921, Ercc6l, LOC668318, Rps4x, LOC100043080, Cited1, Hdac8, Phka1, LOC668331, LOC100042516, EG668339, Dmrtc1b, EG668343, LOC100043105, EG668349, EG382233, Dmrtc1c, EG668360, LOC668357, 1700031F05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168J11.T7 (MSMg01no168_j11.b1)MSMg01-168J11.TJ (MSMg01no168_j11.g1)
ACCAG365725AG365726
length737710
length of high quality
(start - end)
210 (44 - 253)242 (55 - 296)
definitionCHROMAT_FILE: MSMg01no168_j11.b1 PHD_FILE: MSMg01no168_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:56 2005CHROMAT_FILE: MSMg01no168_j11.g1 PHD_FILE: MSMg01no168_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTCAAACAAGGGCAGAGAAGAAGCCCTGCCAGTGAAGGGAGTCCTCC
AGATTGCCCCGAGCTTGGAGGCTTATCTAGTCAAGGTGGACTTTGACCTT
AGAGTTTCCCACCCTATACCAATCTTTAGACTGCACTTGACTTAGATGCT
CAGGCAACCTAGCCTCCAAGAACCCTTATGAAAATTCTCTGTACCTGTGA
CAGTCTTACTGGTGACCCTAGATGGAGCCATTCATAAGGTAGCAGTATGC
AGCCTGCCCATGCATTTTTGTTGATGGGTGCTACCCTGTGACAGCTCTTC
TTGATTTCCCTAANTCCGCTAGCAGACCGCCGATACCATTTTTCATTGTA
TGAATCATCTATCGCCCCTTCTATAAAAAAAACCACTTTCGATTGGGGGG
GCTTTCTCACATCCCCCTCTTTTGCTTCTACCTTCCCATACGTCTTTATT
GCCTCCCTGCTCGATTCTCGCGTCCGCTTGCTTGCCATTCGTTTTATCCC
CTCTTTGCCCGCCCCTTTGCCAAGAGTATATCGCTCCATTCCCCGCGTTT
TTCACCAATTTCTGTTCCCACCACCTTTTCCGACCTATATTTTCATCTTC
CCTCCTTCTTTTTATACTATTGTCCATTCTCCCGAATATCCTTTTTTTTT
TCTCCTCCTTTTCTATCTCCCCTTCATCTCCACTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCATGGCTTGTGTGCAGTCCTGTGGTTAAGTGAGCATAAAGGGTCAA
GTCCTGACTCTGACTAGGCTATCTTTTTGGGGTTACAAAAATGACCTAGT
TAGTACTAACATAGTGACAATATCTCTGTGCCTTGGTTTATTTATCTACT
AAACTGGAAAAAATAATACTCAGTTTTCATAAAATAAAGATTAAGGACCA
AATGCAAGTAACTTAAATATATGTACACTTAGATGACAAAATACAATGTT
GTTTAAGCTTCATATATAATCTTCATATTTGGGCTCGTTAATAAATCTCC
CAAACTGTCCCCCCTTAAGTGATATTAATGGTTTTGGATGTCAGGCCCCC
TATAAAAAAAAAAATAAGAAGGAGGGAGGGTGGTTTCTTCCCCAGCGAGG
TTGACTCTAAATACCTAGTTCTTAACCACCATTCGCACCTTGCCATATCT
CCCTTCTTGCCGCCCCCATAGAATCGCAAGTTAGTACGTCTCGACACCTC
CCCCACTTAATACTTATGCCCTACCATCTCAAACTTCACCAATCCCCATA
TATACACGCCCCACCCGCCCATTTTTATTTTTTGTTCTCCCCCCCCTTTG
ATCTTTCATATCCCCCCCCTTTAACCTTTGACCCCTTTCTTGGTATACTC
CCACACTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_j11.g1 MSMg01no168_j11.g1 CHROMAT_FILE:
MSMg01no168_j11.g1 PHD_FILE: MSMg01no168_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:56 2005
         (242 letters)



>mm_chrX_99064247_99064889
          Length = 643

 Score =  449 bits (232), Expect = e-131
 Identities = 238/240 (99%), Gaps = 1/240 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catggcttgtgtgcagtcctgtggttaagtgagcataaagggtcaagtcctgactctgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 catggcttgtgtgcagtcctgtggttaagtgagcataaagggtcaagtcctgactctgac 381

                                                                       
Query: 61  taggctatctttttggggttacaaaaatgacctagttagtactaacatagtgacaatatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taggctatctttttggggttacaaaaatgacctagttagtactaacatagtgacaatatc 321

                                                                       
Query: 121 tctgtgccttggtttatttatctactaaactgg-aaaaaataatactcagttttcataaa 179
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 320 tctgtgccttggtttatttatctactaaactggaaaaaaataatactcagttttcataaa 261

                                                                       
Query: 180 ataaagattaaggaccaaatgcaagtaacttaaatatatgtacacttagatgacaaaata 239
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ataaagattaaggagcaaatgcaagtaacttaaatatatgtacacttagatgacaaaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 643
Length adjustment: 9
Effective length of query: 233
Effective length of database: 634
Effective search space:   147722
Effective search space used:   147722
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)