Query= MSMg01no168_k06.b1 MSMg01no168_k06.b1 CHROMAT_FILE:
MSMg01no168_k06.b1 PHD_FILE: MSMg01no168_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:01 2005
(732 letters)
>mm_chrX_129034329_129035460
Length = 1132
Score = 1073 bits (555), Expect = 0.0
Identities = 678/741 (91%), Gaps = 47/741 (6%)
Strand = Plus / Minus
Query: 12 gaatt-ccataaataaattaaggagtgataataaaagggcatacatcactcaaaatggaa 70
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 gaattcccataaataaattaaggagtgataataaaagggcatacatcactcaaaatggaa 826
Query: 71 gttgttgtataacaacaccaataaaatttgtacaccaaaataaaactgtttctccaaaat 130
||| ||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||
Sbjct: 825 gtttttgtataacaacaccaataaaatgtgtacaccaaaataaaacagtttcttcaaaat 766
Query: 131 agtttataaataaagagaaattaaactaaattttaaa-aaaatgtgtttaaaaaacacac 189
||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 765 agtgtataaataaagagaaattaaactaaattttaaagaaaatgagtttaaaaaacacac 706
Query: 190 ctatttgaagcatttgacatctgtcaaccagcagtctggtatctttttaaattactgagt 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ctatttgaagcatttgacatctgtcaaccagcagtctggtatctttttaaattactgagt 646
Query: 250 acttacaaatgagaaaaaacagaatctcattgttttttttttttttcatctgtacaaaag 309
||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 645 acttacaaatgagaaaaaacagaatctcatt---------ttttttcatctgtacaaaag 595
Query: 310 cattttaccagaagcacttaccaaaaatagaaca-aagatatataaaatattttttgaat 368
|||||||||||||||||||||||||||||||| | ||||||||||||||||| | |||||
Sbjct: 594 cattttaccagaagcacttaccaaaaatagaa-agaagatatataaaatattatctgaat 536
Query: 369 cattaacatatgcaaagtaattaagtaaagaatggggcaca-tttttt------ttta-- 419
|||||||||||||| |||||||||||||||||| |||||| |||||| ||||
Sbjct: 535 cattaacatatgcagggtaattaagtaaagaatgtggcacaattttttataacatttatt 476
Query: 420 -ccccccccccccatgtttctcattcccaaaaaaaa------aaggaccatttttagcat 472
| ||||||||||||| | |||||| | |||||||||||||
Sbjct: 475 tc-----------atgtttctcattc--agaaaaaatttcccac---ccatttttagcat 432
Query: 473 gtattaaagtccattccatttacagcataattgtgattagttttagtgagaggtatacaa 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gtattaaagtccattccatttacagcataattgtgattagttttagtgagaggtatacaa 372
Query: 533 tgcttagataggccatactgaattcctagttttt-ttcattgagtttctaatgtatttta 591
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 371 tgcttagataggccatactgaattcctagtttttcttcattgagtttctaatgtatttta 312
Query: 592 aatgaaaatattggaaaagggtcactaaatatcaagtcatgttaaaacatttgtacaagt 651
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 311 aatgaaaatattggaaaagggtcactaaatatcaagtcatgttaaaacattagtacatgt 252
Query: 652 taatgtctaatcatatatgataggttgccaaaatagtttaatatttaatatttcaagatt 711
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 251 taatgtctaatcatatatgataagttgccaaa-tagtttaatatttaatatttcaagatt 193
Query: 712 gtatttgaggtgtttgaacta 732
|||||||||||||||||||||
Sbjct: 192 gtatttgaggtgtttgaacta 172
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 732
Length of database: 1132
Length adjustment: 10
Effective length of query: 722
Effective length of database: 1122
Effective search space: 810084
Effective search space used: 810084
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no168_k06.g1 MSMg01no168_k06.g1 CHROMAT_FILE:
MSMg01no168_k06.g1 PHD_FILE: MSMg01no168_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:01 2005
(377 letters)
>mm_chrX_128905277_128906055
Length = 779
Score = 679 bits (351), Expect = 0.0
Identities = 375/393 (95%), Gaps = 16/393 (4%)
Strand = Plus / Plus
Query: 1 attatcacctttagttgtcaatgcaaaaaaaa----------------aaaaaaaaaaga 44
|||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 187 attatcacctttagttgtcaatgcaaaaaaaaaaaaaaaaaaaagaagaaaaaaaaaaga 246
Query: 45 aatcacaccctgctttattcaagaagtcaaagagtcattgatattttcattttctagcaa 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aatcacaccctgctttattcaagaagtcaaagagtcattgatattttcattttctagcaa 306
Query: 105 aagaaacagatacggggacacagacaaggatgttgtcatccccctgagaagaatcatgcc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aagaaacagatacggggacacagacaaggatgttgtcatccccctgagaagaatcatgcc 366
Query: 165 atcaaagagccagttagtctgaaacatctttaaaatgctggcaggtcctatatattaaga 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 atcaaagagccagttagtctgaaacatctttaaaatgctggcaggtcctatatattaaga 426
Query: 225 ttttaactttctaatagatgctggcacatacttttgttttaagtttcttaaatagtgtac 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttttaactttctaatagatgctggcacatacttttgttttaagtttcttaaatagtgtac 486
Query: 285 tgtgaaaagctacagacaatatttcagttgcaaataacaagcatttactcatcacctaat 344
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 487 tgtgaaaagctacagacaatatttcagttgcaaataacaagcagctactcatcacctaat 546
Query: 345 ctcagaataaccaaatttgattgttttttggtc 377
|||||||||||||||||||||||||||||||||
Sbjct: 547 ctcagaataaccaaatttgattgttttttggtc 579
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 779
Length adjustment: 9
Effective length of query: 368
Effective length of database: 770
Effective search space: 283360
Effective search space used: 283360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
