BAC Information

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BAC

Clone NameMSMg01-169P21
ChromosomeX (Build37)
Map Location 62,467,992 - 62,468,628
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk4, LOC100040011, Ctag2
Downstream geneLOC671840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169P21.T7 (MSMg01no169_p21.b1)MSMg01-169P21.TJ (MSMg01no169_p21.g1)
ACCAG366699AG366700
length721753
length of high quality
(start - end)
610 (74 - 683)637 (78 - 714)
definitionCHROMAT_FILE: MSMg01no169_p21.b1 PHD_FILE: MSMg01no169_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:49 2005CHROMAT_FILE: MSMg01no169_p21.g1 PHD_FILE: MSMg01no169_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGG
AATTCTTTGTTTTGCCATGAACCCCATCTTTTAATGGGGTTATTTGATTT
TCTGGAGTCCAACCTCTTGAGCCCTTTATATATTTTTATATTAGTCCCTT
ATATGATTTAAAATAGGTAAAGATCCTTTCCCAATATGTTGGTGGCCCTT
TTGTCTTATTGACAGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATG
AGGTCCCATTTGTCAATCCTCGATTTTACAGCACAAGCCATTGCTGTTCT
ATTCAGGAATTTTTCCCCTGTGCCCATATATTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCAGTGTATCTGGCTTTATGTGAAGTTTCTTGATC
CACTTAGATTTGACCTTACAAAAAGGAGATAGGAATAGATCAATTGGCAT
TCGTTTACATGATAACAATCAGTTGTGCCAGCACCATTTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTTGAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTC
TACTTGTCTGCCACTATACCAGTACCATGCAGTTTTTATCACAATTGCTC
TGTAGTAAAGCTTTAGGTCAGGCATTGTCATTCCACCAGAGGTACTATTA
TCCTTGAGAAGAGTTTTTGCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAACCATTCCAATTATGCCATTT
GTTCAATAAGGATAAGAACATGAAGCCCCCTAAAACAAGATGTAATAAGA
GCTTGATGAAGATAATTTATGTCTATCTGTTTTGTAAAGTAAATAATTAC
CTACTTGATTTTAAAAATAAGATCTTTCTGAGCTTTTACCATTTCCATTG
CCATATTCAGTTATTTTTTTTCTTTGAATAGCTTGACTTCTGTAATGGAG
CTAAAAATATTAAGAGCTGCTACTTTTGAAATGATTGGCTACAAACAACA
GTCTATGTCCATAGCAACCAGATGTCATTCCACCAATATTTCCAATATTC
TGGAATCCACCATGCTTACTCATGACTACAATAATTTTATACCTCTTATA
GTTTTTCAAGTTGTGAAAAAGAAGGAACAATGAAAGAGTACAAATCACTC
AGTTCTAAAGACATATTTCTATATATTAAACTGGCATTAAAATAGCATGT
TTCTACAAATAGCTTATGCTCTAAGATCAAGAACTGACAAATGGGACTTC
ATAAAATTGCAAACTTTCTGTAAGGCAAAGGACACTGTCAATAAGAAAAA
AATACAACCAACAGATTGGGAAAAGATCTTTATCAACCCTACATTTGATA
GAGGGCAAATATCCAATATATANCAAGAACTCAAGAAGTTAGACACCTGA
GAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_p21.g1 MSMg01no169_p21.g1 CHROMAT_FILE:
MSMg01no169_p21.g1 PHD_FILE: MSMg01no169_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:49 2005
         (637 letters)



>mm_chrX_62467792_62468828
          Length = 1037

 Score = 1193 bits (617), Expect = 0.0
 Identities = 632/637 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaccattccaattatgccatttgttcaataaggataagaacatgaagccccctaaaaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 caaccattccaattatgccatttgttcaataaggataagaacatgaagtcccctaaaaca 260

                                                                       
Query: 61  agatgtaataagagcttgatgaagataatttatgtctatctgttttgtaaagtaaataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatgtaataagagcttgatgaagataatttatgtctatctgttttgtaaagtaaataat 320

                                                                       
Query: 121 tacctacttgattttaaaaataagatctttctgagcttttaccatttccattgccatatt 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 tacctacttgattttaaaaataagctctttctgagcttttaccatttccattgccatatt 380

                                                                       
Query: 181 cagttattttttttctttgaatagcttgacttctgtaatggagctaaaaatattaagagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagttattttttttctttgaatagcttgacttctgtaatggagctaaaaatattaagagc 440

                                                                       
Query: 241 tgctacttttgaaatgattggctacaaacaacagtctatgtccatagcaaccagatgtca 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctacttttgaaatgattggttacaaacaacagtctatgtccatagcaaccagatgtca 500

                                                                       
Query: 301 ttccaccaatatttccaatattctggaatccaccatgcttactcatgactacaataattt 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 ttccaccaatatttccaatattctggactccaccatgcttactcatgactacaataattt 560

                                                                       
Query: 361 tatacctcttatagtttttcaagttgtgaaaaagaaggaacaatgaaagagtacaaatca 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatatctcttatagtttttcaagttgtgaaaaagaaggaacaatgaaagagtacaaatca 620

                                                                       
Query: 421 ctcagttctaaagacatatttctatatattaaactggcattaaaatagcatgtttctaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcagttctaaagacatatttctatatattaaactggcattaaaatagcatgtttctaca 680

                                                                       
Query: 481 aatagcttatgctctaagatcaagaactgacaaatgggacttcataaaattgcaaacttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatagcttatgctctaagatcaagaactgacaaatgggacttcataaaattgcaaacttt 740

                                                                       
Query: 541 ctgtaaggcaaaggacactgtcaataagaaaaaaatacaaccaacagattgggaaaagat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgtaaggcaaaggacactgtcaataagaaaaaaatacaaccaacagattgggaaaagat 800

                                                
Query: 601 ctttatcaaccctacatttgatagagggcaaatatcc 637
           |||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctttatcaaccctacatttgatagagggcaaatatcc 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)