BAC Information

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BAC

Clone NameMSMg01-170P01
ChromosomeX (Build37)
Map Location 80,191,634 - 80,191,918
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629310
Downstream geneDmd, Tsga8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170P01.T7 (MSMg01no170_p01.b1)MSMg01-170P01.TJ (MSMg01no170_p01.g1)
ACCAG367342AG367343
length728719
length of high quality
(start - end)
---286 (75 - 360)
definitionCHROMAT_FILE: MSMg01no170_p01.b1 PHD_FILE: MSMg01no170_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:02 2005CHROMAT_FILE: MSMg01no170_p01.g1 PHD_FILE: MSMg01no170_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCAAAAATTGCGGCCGCNAAANGAANCCCCACATCCCTATCTGCCGNG
NAANNCNCNATTTTCCGAAAAAAAAGGGNGNGNNANGNANNGANNANNAN
AANANAANAGNNAAAATTTGACCCACAATAGAAANGGNNNAGNNAGNAAA
GNNAGGGAGGNNNAAGAAGGAGAAGGNGNGNNNGNNNNANANANNNANNA
GNAAANAAANAAANAAANAAANAAANAAANAAGGAANANAGGGGGGGNAN
ATTTTTNANAGNANNAAGGAGATANAAGATNTANAGTGTGNNTANAGGTT
AAGNAAGAAANNNTGATTTAATATTTTTGGNGAAGANNAANAAANAAGNN
ANNAATTTTAATAAGTTCCCCGCCCCCCCCCAGGNANGNANGNANANANG
GANANNNNNGAANAAGAAAANNNAAAANNAAAAGGGGGGGGAGGGGGGGG
AGNANNNGNAANANANAGGGGGNAGAANNANGNAGNNNAANNANANANGA
ANANANGAAGGNNAAANANNNANNNNNANAGAAGGNAANNNGGNNNGAGG
AGGAANAAANNAGGGAAAANGGGGNGAGAGNANGGGANGNAANNGGGGAA
AANANAAGNAAAAGAGGGGGGGAAAAAAGGAANNAAGGNANAGAGGGGAG
ATTTTTTATTTTATTTGAAGTAAATTGTAAAAATAATGTAATGGTATATG
GTTAAGTTGTAAATAANAATAATTTATG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCGGGCCTTGAA
CTCAGAAATCCGCCTGCCTCTGCCTCCCTAGTGCTGGCATTAAAGGCGTG
CACCACCACGCTCGGCTAAAATATATTTTTTAAAAAATATTCTTAAAAGT
AAACAAAGCTTTTAAGATGCAAGGAATAGACAATTGTTATTAGTTCCTAT
TCCAAAAATACTAAACTATAAAAATACATTAAAAATAGATGTTAGCAAAT
TTTATACCTTTTACTTCATAAATACCTGAATAATTCAAAGTATTCCCATC
TTGAAATTATTTTGTTTTCTCGCCCCCCCCCAGTAAAATAACAAATACAT
GACAAGCCTCAGTTACACAACTAAAGAATGAACAAATGTATGTATAGACA
CTGTTTTGAAGTGTTTATTCAGGAGTAAGAGAAAATGATGAGCTGGTAAT
TAATGTGAAATTTTACTTAAAGAAGTTGAATAAATTCTGGATCTCTACCA
TAAGATACTACAACAGAAGTCCATCATACCATAGTATATGCTTAAACATT
TTAAGAGAATAAATCGAAAATACTTTACCCCATAAACTACAGTTTCAAAA
AGGTACATTGAGAGTTATTTAATATCATCCATTAGAAAATTTGAAGTTAT
AGCTGTCATGATATTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_p01.g1 MSMg01no170_p01.g1 CHROMAT_FILE:
MSMg01no170_p01.g1 PHD_FILE: MSMg01no170_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:02 2005
         (286 letters)



>mm_chrX_80191434_80192118
          Length = 685

 Score =  499 bits (258), Expect = e-146
 Identities = 279/286 (97%), Gaps = 1/286 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttgtagaccaggcgggccttgaactcagaaatccgcctgcctctgcctccctagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttgtagaccaggcgggccttgaactcagaaatccgcctgcctctgcctccctagtgc 260

                                                                       
Query: 61  tggcattaaaggcgtgcaccaccacgctcggctaaaatatattttttaaaaaatattctt 120
           ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 261 tggcattaaaggcgtgcaccaccacgcccggctaaaatatatttttaaaaaaatattctt 320

                                                                       
Query: 121 aaaagtaaacaaagcttttaagatgcaaggaatagacaattgttattagttcctattcca 180
           ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 321 aaaagtaaacaaagcttttaagatgcaagaaatagacaattgttattagttcatattcca 380

                                                                       
Query: 181 aaaatactaaactataaaaatacattaaaaatagatgttagcaaattttataccttttac 240
           ||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||
Sbjct: 381 aaaatactaaactataaaaatacat-aaaaattgatgttagcaaatgttataccttttac 439

                                                         
Query: 241 ttcataaatacctgaataattcaaagtattcccatcttgaaattat 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttcataaatacctgaataattcaaagtattcccatcttgaaattat 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 685
Length adjustment: 9
Effective length of query: 277
Effective length of database: 676
Effective search space:   187252
Effective search space used:   187252
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)