BAC Information

Click to search

BAC

Clone NameMSMg01-171K22
ChromosomeX (Build37)
Map Location 112,585,150 - 112,585,439
singlet/doubletsinglet
Overlap genenone
Upstream geneKlhl4, Gm1866, EG546361, EG237009, 4930524E20Rik, LOC237008, EG664969, EG546362, LOC100039255, LOC623913, LOC546363
Downstream geneLOC100039277, Cpxcr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171K22.T7 (MSMg01no171_k22.b1)MSMg01-171K22.TJ (MSMg01no171_k22.g1)
ACCAG367844AG367845
length761765
length of high quality
(start - end)
---296 (75 - 370)
definitionCHROMAT_FILE: MSMg01no171_k22.b1 PHD_FILE: MSMg01no171_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:57 2005CHROMAT_FILE: MSMg01no171_k22.g1 PHD_FILE: MSMg01no171_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGATTTCTCACGGATTTTTACCGTGAAATGATGCTGTATTTCGG
CCCATGTTTGTTTTTATATTCTACAGACGGAAAATTCCTAGCTATACGAA
CCTGTCTATAGCGGTTAGAGAGATCGCATACCAGGACCGTAACAGCACAC
TCAGTATGTCTAGAACCGAGAGGAGAACACCCATTCCAGAGGAGTGGACT
ACAGGACATAGTCTCTCGCAGAGCTAAGATCAACCTGTTATAACGGAAGA
GAAAGATACGAAGAATCAACATATACATCCCTGGTAGTTCTTTGGGTGAA
TCAACCTCATAAATTATTTCGTTTTGCCCTCCACAACCGCCGCAGAGAGA
GCATCCCGATTAATGACATCGGACACGAAATGAAAAACACAAAACTGAAC
CTGGCGAACTTAGGGAATAATCACGAACCTACTATCGAAGACTATGTATA
CCCCCCCAAATGAAAGATCTAGATGAAATGGATGATTTTCTAGACGGATA
CCTTGGACCCAAGTTGATTAATGATGATGCCAACTATCTAAATGATCCGA
TAACCCCGATCACTATAGAAATAGTCATTGATGACCTCCCAGGAGCGATA
GACCATGACCTGATAGGTTTATGGGAGAAGTCTACCGGATCTTTCGAGAA
TAGCTAGTACCAAGACGCCTCAAACGATTCCGATATATAGATGCCTAGGG
ATTGCTACCTA
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGAACATTCTATTTCTAATTCTCCT
TGCACTATAATTTGGAAGCAACTTTTACCTAGTTATATGTTTAATATATA
CTCCATGATGAAAATAGAAAGTAATTGAACAATCAGTAAAAGTGGTAGTA
GAAAGAAAGATTCTGTTGAATGAAAAGATGACACAAATTGTTTAACCATA
GTTATTTGTAGAATAGTTGACTCATATTATCTGTTAGAGAAGGTCATAAG
GATATTCTTTATTGGTTACATATTTTTTACCTCATGATAGTTCCACATGA
ACACGCAAGAAATACAAATTAGTANATTCCTATAACCCATCCCGGATGTA
TTAACTAATTTTCAAAAGTATAGAGCCTCAAATTAAAATAAATAATGTAC
AGGAGTTTGTAAATATATTATACTTAATGTAGTCTTCTTTAATTATTACA
TCCAATCATATCAGGGAAATAACAATTCCAGGAAGGAGCAGGAAATAATA
GTATGTGATTTAATCATAAGAAATATATGCATCACAAAACTGTTTTGTTT
TTAAGGCACTCATCACTTTAATGAGATTGTGATAATTCTCTTGGAAGTGA
CTATAAAATCTTTTCCTAGGAGAAAATTACACATATTTTTAAACTACCCA
AATCTGTTCACTTNAAATCTGAAATAATTTCAAATATTTATCCATTATTT
CATATTATGTAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_k22.g1 MSMg01no171_k22.g1 CHROMAT_FILE:
MSMg01no171_k22.g1 PHD_FILE: MSMg01no171_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:57 2005
         (296 letters)



>mm_chrX_112584950_112585641
          Length = 692

 Score =  528 bits (273), Expect = e-154
 Identities = 288/295 (97%), Gaps = 6/295 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaacattctatttctaattctccttgcactataatttggaagcaacttttacctagtt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||
Sbjct: 201 atgaacattctatttctaattctccttgcactataatttggaagcaactttta----gtt 256

                                                                       
Query: 61  atatgtttaatatatactccatgatgaaaatagaaagtaattgaacaatcagtaaaagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atatgtttaatatatactccatgatgaaaatagaaagtaattgaacaatcagtaaaagtg 316

                                                                       
Query: 121 gtagtagaaagaaagattctgttgaatgaaaagatgacacaaattgtttaaccatagtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtagtagaaagaaagattctgttgaatgaaaagatgacacaaattgtttaaccatagtta 376

                                                                       
Query: 181 tttgtagaatagttgactcatattatctgttagagaaggtcataaggatattctttattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tttgtagaatagttgactcatattatctgttagagaaggtcataaggatattctttattg 436

                                                                  
Query: 241 gttacatattttttacctcatgat-agttccacatgaacacgcaagaaatacaaa 294
           |||||||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct: 437 gttacatattttttacttcatg-tcagttccacatgaacacgcaagaaatacaaa 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 692
Length adjustment: 9
Effective length of query: 287
Effective length of database: 683
Effective search space:   196021
Effective search space used:   196021
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)