Query= MSMg01no172_b05.b1 MSMg01no172_b05.b1 CHROMAT_FILE:
MSMg01no172_b05.b1 PHD_FILE: MSMg01no172_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:27 2005
(319 letters)
>mm_chrX_17039310_17040028
Length = 719
Score = 584 bits (302), Expect = e-171
Identities = 311/314 (99%), Gaps = 2/314 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtcacacttacttacttcaaatcccagagcactgtacttccttcccagtgaag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtcacacttacttacttcaaatcccagagcactgtacttccttcccagtgaag 264
Query: 65 aaagtgtaacctaggctc-aaatgatcggttgacacacactcggcttgagaagagggagt 123
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaagtgtaacctagg-tccaaatgatcggttgacacacactcggcttgagaagagggagt 323
Query: 124 ttcacagtctaaataaaggttattgatctgtggcatcatggtatgatcacagctaataaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcacagtctaaataaaggttattgatctgtggcatcatggtatgatcacagctaataaa 383
Query: 184 gatatctgctttgctgacttatacctgggtcagtgcatcacagcaagtttcttcctagct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gatatctgctttgctgacttatacctgggtcagtgcatcacagcaagtttcttcctagct 443
Query: 244 ggtgtcatgaggacactgacaaagtgtcatcatttcattatgggtttactttcagtgttg 303
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 444 ggtgtcatgaggacactgacaaagtgtcatcatttcattaagggtttactttcagtgttg 503
Query: 304 gcctgtggctattg 317
||||||||||||||
Sbjct: 504 gcctgtggctattg 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no172_b05.g1 MSMg01no172_b05.g1 CHROMAT_FILE:
MSMg01no172_b05.g1 PHD_FILE: MSMg01no172_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:27 2005
(296 letters)
>mm_chrX_17209508_17210203
Length = 696
Score = 489 bits (253), Expect = e-143
Identities = 280/289 (96%)
Strand = Plus / Minus
Query: 7 actacctgcatcaaaagtggaagagaggaagaaaaaagtaggtgccaaaaatcacaatat 66
||||||||||||||||| ||||||||||||||||| |||||||| |||||| ||||||
Sbjct: 344 actacctgcatcaaaaggggaagagaggaagaaaagagtaggtggtaaaaattgcaatat 285
Query: 67 gagaatatgtagaaaaggaagccatatagagagaccagagaactttcatagttaaggaca 126
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 284 gagaatatgtagaaaaggaagccatatagagagaccagaggcctttcatagttaaggaca 225
Query: 127 aactcaggctgatggacagcaaggaaatgccttcatccttaaagtgtccaaagaagaatg 186
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 224 aactcaggctgatggacagcaagaaaatgccttcatccttaaagtgtccaaagaagaatg 165
Query: 187 ccgctctgacaacaccatgatttggcttagagagacagctgtcagacttccaatctagta 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 ccgctctgacaacaccatgatttggcttagagagacagctgtcagacttccaatctagta 105
Query: 247 aactgtcaaataatgaatttgtgttgttttagctctctaggtttattac 295
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 aactgtcaaataatgaatttgtgttgttttagctctctaggtttattac 56
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space: 197169
Effective search space used: 197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
