BAC Information

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BAC

Clone NameMSMg01-172C02
ChromosomeX (Build37)
Map Location 148,415,681 - 148,415,996
singlet/doubletsinglet
Overlap genenone
Upstream geneGnl3l, Fgd1, Tsr2, LOC100040221, EG667027, Wnk3, LOC675278, ORF34, LOC623804, LOC100039760, Phf8, LOC385448, LOC237116, Huwe1, LOC675514
Downstream geneHsd17b10, Ribc1, Smc1a, LOC100040394, Iqsec2, Jarid1c, 2900056M20Rik, Tspyl2, Gpr173, LOC207318, EG667113, EG635412, LOC635396, EG667130, Shroom2, Gpr143, LOC100039874, LOC667147, EG624124
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172C02.T7 (MSMg01no172_c02.b1)MSMg01-172C02.TJ (MSMg01no172_c02.g1)
ACCAG368142AG368143
length719719
length of high quality
(start - end)
318 (46 - 363)291 (76 - 366)
definitionCHROMAT_FILE: MSMg01no172_c02.b1 PHD_FILE: MSMg01no172_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:31 2005CHROMAT_FILE: MSMg01no172_c02.g1 PHD_FILE: MSMg01no172_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTATATAGAATGGCCCCAAACTTCCAGTGTTTTTCTAACTTCGG
CCTCCCACTGCCAGAGTTATTGGCCCGTACTACCACATCCAGCAGTTGGG
AAGCATTTTTTTTAAAGATTTAAAGTTTTTTAAATGTGTATTTGTGTGTC
TGTATGTACAAGCATGTGTGTGGGTTCCTAAGGGCACAAACAGGATGGGG
CATCTGAGTTGAAGATTCGGATGTTTGTGGCCTCTGATGTAGGTCCTGAA
AACTGATTTTGTCAGTTTTGGTCCATTTCTCCAGCTCTCTTGGAAGCATT
TTGTTGACATTTGNGTTCTCTCCACCACCCACCCTCGTTCTGTAGGATGT
TGTAAACATACTTTGATGATATTTTACTAAATATTATTGCTTTTCTCTAT
ATGTTACTAGCACTCATTCAAAACTAAAACCATACCAGTTTACCATTTAA
ATTGGCAGCGTAAACCTGGAAGAGCAGGGCCCCAAAATGAGGCAGACAAA
AGTCCCATGCAATAGCCAATTTTACTCAGCACATCAGACAATTTATAATC
TGAGGGTTAAAAATCATATGAATAATATGTCCAAACACAAGAATGAGCCA
CATATGATGGACAAAATGCACATGGTAAAACCAATGGTATTCTACAGAGG
CTTATAAATAAATAAATAN
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTGGCTTCTTTGTGAAACTGATCC
ATATCCCTATTAATAACATTACTCCGGGTGGCTGAGTCCTTTCTCATCAT
GGGACAAGTGAACCAATGAGATAGTGATGAGCTCATGAAGTAAAACGTTG
CCTGGATGCTTTATGTATTTTGTTTCTTTCCTCCTTCCTATGAGGTTTTC
TATTTCTAAATTAAAATAATTTCAAAATAAACCCTTTTTCCATAACAAAA
AAATCAGAGAAGATGGAAGTAAGCACAGATCTAATCAATGATCTTGAACA
AGGGAGCAAAGGTAATTTAATGCACACACCAGATTATATATATATATATA
TATATATCCAAAAGATGCCCCACCCCACCATGTCACAGGGGCACGTGTTC
CACTGTGTTCATAGCAGTCTTATTTGTGATAGCCAGAAGCTGGAAAAAAC
CCAGATGTCCCACAGCAGAGGAATGGATACAGAAAATGTGCTTCATTTAC
GCAATGGAATACTACTCAGCTATTAAGAAAGTGAACATCCTGAGTTTTGC
AGGCAAATGGATGGAACTAGAAAATACCATTCTGAGTGAGGTAGCTCACA
CCAAAATGGACATGCATGGTATGCACTCACTAATAAATGGATATTAGCCA
CAAAAAAGTACTGAATACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_c02.b1 MSMg01no172_c02.b1 CHROMAT_FILE:
MSMg01no172_c02.b1 PHD_FILE: MSMg01no172_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:31 2005
         (318 letters)



>mm_chrX_148415478_148416196
          Length = 719

 Score =  557 bits (288), Expect = e-163
 Identities = 309/318 (97%), Gaps = 5/318 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccctatatagaatggccccaaacttccagtgtttttctaacttcggcctcccac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccctatatagaatggccccaaacttccagtgtttttctaacttcggcctcccac 263

                                                                       
Query: 64  tgccagagttattggcccgtactaccacatccagcagttgggaagcattttttttaaa-- 121
           |||||||||||  ||| ||||||||||||||||||||||||||||||||||||  |||  
Sbjct: 264 tgccagagttacaggcacgtactaccacatccagcagttgggaagcatttttt--aaaaa 321

                                                                       
Query: 122 -gatttaaagttttttaaatgtgtatttgtgtgtctgtatgtacaagcatgtgtgtgggt 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agatttaaagttttttaaatgtgtatttgtgtgtctgtatgtacaagcatgtgtgtgggt 381

                                                                       
Query: 181 tcctaagggcacaaacaggatggggcatctgagttgaagattcggatgtttgtggcctct 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 382 tcctaagggcacaaacaggatggggcatctgagttgaagattcgggtgtttgtggcctct 441

                                                                       
Query: 241 gatgtaggtcctgaaaactgattttgtcagttttggtccatttctccagctctcttggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gatgtaggtcctgaaaactgattttgtcagttttggtccatttctccagctctcttggaa 501

                             
Query: 301 gcattttgttgacatttg 318
           ||||||||||||||||||
Sbjct: 502 gcattttgttgacatttg 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 719
Length adjustment: 9
Effective length of query: 309
Effective length of database: 710
Effective search space:   219390
Effective search space used:   219390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)