BAC Information

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BAC

Clone NameMSMg01-172G17
ChromosomeX (Build37)
Map Location 121,321,183 - 121,321,359
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039751, LOC100039763, LOC665281, EG625591, LOC665325, EG382265, LOC665364, EG546368, LOC100038940, LOC100038941, EG625699, LOC100038942
Downstream geneLOC100039828, EG434843, EG665463, EG665522, LOC100038969, LOC100038978, EG665579
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172G17.T7 (MSMg01no172_g17.b1)MSMg01-172G17.TJ (MSMg01no172_g17.g1)
ACCAG368337AG368338
length715745
length of high quality
(start - end)
309 (48 - 356)288 (68 - 355)
definitionCHROMAT_FILE: MSMg01no172_g17.b1 PHD_FILE: MSMg01no172_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:53 2005CHROMAT_FILE: MSMg01no172_g17.g1 PHD_FILE: MSMg01no172_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCCACAGCCTCTAGTGTCCCCAGTGGCAGCTGAGAGGGTGATA
TCCTCTTAGTTGTGTATTCTACGACAAATATTGAAATTGTTTAGCTCACT
GGAAGTGTTTTGGAATAGTCTCTCAGGTGTTTGGGGCCTGCTGACAAATC
AAGAGGACTCTTTTGGCTGATAAGAGATATCTGAATAATTCTTGATCAGA
TCAGGACTTTCTGAAGACCCATTGTTTGGACAGAGCATCTTTCAGTCTTC
TACTAGAATGACAATGTTTGTGTCACATTTCATAGCAGGAGAATGATTTA
ATCTTCTTTTTTGTGGCCACGAACANTCCCCAACTGTCTTTGAATCTGTT
CCATAGAGGGGGATAATCTTCTTGAACCCCTGACAGAATGAGAATTTATC
ATAACCCCTGGGGAAGTTGCCTATGGTTCTAGTTCACTTTGTGCAGAAGT
AAAGTAAAGTCCCTTTGGAGGACTTACGTGATTCTACCACATCTTGAGTA
TGTGTGGAACACTCAAGTGCCATTCCATGAATGGCCAAGACACTTGACCT
CCTTGTGGAATTTTTTTCTCTCCGCTTGGCTAGGTATGACCTGCGTTCAG
GCTCTCTTACGAAGTTGCCCCATTATTTTCCTTTGTTCCGCAATACATGT
ATTTTATCCCCTTTG
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCAGAAATCTAGTTTTTTGATGGTGTTGTTCTT
ACTATAGGGTTGCAATCCCCTTCACTTCCTTCAGTCTTTGCTCAAACTCT
TCCATAGGGGTTCCTGTGTTTAGACCAATGGCTGGCTGTAAATATCTGCA
TCTGTCTCAGTCATTTGATGGCATAGCCTCTTTTAGGACAGTGATGCCAT
GTTCCTGTCTGAAAGCATATCTTGGTCAATTAACAAATTAGACCTCCTGA
AACTGAAAACGTTCTGTTTGGCAAAGGACACTGTCAATAGGACAAAATGG
CAATCAATTATTCGCCGAAACGANNCTTACTAACCCTACATCTGATCGAG
GGCTAATACTCCCAATATACAAAGAATTCAAGAAGCTAGACTCCGGAGAA
TAAAAAAAAAATTAAAAACATTAACAAAATCCTAACGAAAAAATGAGCTC
TAGAGCTAAACAAAATTCTCATTTTAGGAATCTCAAAAGCCTGAGATGGA
CCTAAAGAAATGTTCAACATCCTTATTTATAGTGAAATACAAATCAAAAC
CACGCTGAGAATCCATCCTAAACCAATCAGAATGTTTGAGACCAAAATGT
CAGGTGAAAATAGTTGCTAGAGCAAATGTAGATAACAAGAACACTTTATC
TTTGCTAGTGGGATTGCAAAATGTTTTCCGGATTCCATAATCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_g17.b1 MSMg01no172_g17.b1 CHROMAT_FILE:
MSMg01no172_g17.b1 PHD_FILE: MSMg01no172_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:53 2005
         (309 letters)



>mm_chrX_121320853_121321562
          Length = 710

 Score =  174 bits (90), Expect = 5e-48
 Identities = 156/178 (87%), Gaps = 3/178 (1%)
 Strand = Plus / Plus

                                                                       
Query: 131 tgtttggggcctgctgacaaatcaagaggactcttttggctgataagagatatctgaata 190
           ||||||||  ||| |||||| ||| |||| | |||||||||| || | ||||| ||||||
Sbjct: 331 tgtttgggatctgatgacaagtcaggagggcccttttggctggtaggggatatttgaata 390

                                                                       
Query: 191 attcttgatcagatcaggactttctgaagaccca-ttgtttggacagagcatctttcagt 249
           |||||||||||||||||||||||||||||||| | ||||||| | |||||||||||||||
Sbjct: 391 attcttgatcagatcaggactttctgaagacc-agttgtttgcagagagcatctttcagt 449

                                                                     
Query: 250 cttctactagaatgacaatgttt-gtgtcacatttcatagcaggagaatgatttaatc 306
           ||||| ||||||||| ||||||  | ||||| ||||||||||||||| ||||||||||
Sbjct: 450 cttctgctagaatgagaatgttcagggtcacttttcatagcaggagattgatttaatc 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 710
Length adjustment: 9
Effective length of query: 300
Effective length of database: 701
Effective search space:   210300
Effective search space used:   210300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)