Query= MSMg01no172_l20.b1 MSMg01no172_l20.b1 CHROMAT_FILE:
MSMg01no172_l20.b1 PHD_FILE: MSMg01no172_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:16 2005
(566 letters)
>mm_chrX_67941881_67942847
Length = 967
Score = 1027 bits (531), Expect = 0.0
Identities = 558/567 (98%), Gaps = 1/567 (0%)
Strand = Plus / Minus
Query: 1 ctacatagtgagtttcagaccagattagctatcagcaagccccaggtatcctgtctccac 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 611 ctacatagtgagtttcagaccagattagctatcagcaagcaccaggtatcctgtctccac 552
Query: 61 tcagggctgagattataggtacaatatgcagtttttaatgtaggtactgaggatctaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tcagggctgagattataggtacaatatgcagtttttaatgtaggtactgaggatctaaat 492
Query: 121 ttaggtccttgtgttctgcttaatgcctttactggctgagatatctctccagccctgaat 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 491 ttaggtccttgtgttctgcttaatgcctttactggctgaggtatctctccagccctgaat 432
Query: 181 actttg-ttttaattctttgtttcatacacacatgtgatgaattttggccacttttcatc 239
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 actttgtttttaattctttgtttcatacacacatgtgatgaattttggccacttttcatc 372
Query: 240 tccccaccttaccccttttcatctccctttctctcccaatggcacatgtgcaactcacca 299
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tccccactttaccccttttcatctccctttctctcccaatggcacatgtgcaactcacca 312
Query: 300 ctggctccatcactgaagataatgacaccctctctgccagcaacaattaactattaatag 359
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 311 ctggttccatcactgaagataatgacacccactctgccagcaacaattaactattaatag 252
Query: 360 ttccaagggagagttgaggcattgagtctctttcccaatgatgaaatgttggcaatcctg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttccaagggagagttgaggcattgagtctctttcccaatgatgaaatgttggcaatcctg 192
Query: 420 gtaaaatgtgactaaggcagtcataggccctaaggagaaacctactactaataggttata 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gtaaaatgtgactaaggcagtcataggccctaaggagaaacctactactaataggttata 132
Query: 480 cctatagattagtgtttccttcagcttttggtcagaaacattactttattcagtgtgtgg 539
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 131 cctatagattagtgtttccttcagcttttggtcagagacattactttattcagtgtgtgg 72
Query: 540 cagctaacatggtgactcataaataac 566
|||||| ||||| ||||||||||||||
Sbjct: 71 cagctagcatggggactcataaataac 45
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 967
Length adjustment: 10
Effective length of query: 556
Effective length of database: 957
Effective search space: 532092
Effective search space used: 532092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no172_l20.g1 MSMg01no172_l20.g1 CHROMAT_FILE:
MSMg01no172_l20.g1 PHD_FILE: MSMg01no172_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:16 2005
(290 letters)
>mm_chrX_67796270_67796959
Length = 690
Score = 561 bits (290), Expect = e-164
Identities = 290/290 (100%)
Strand = Plus / Plus
Query: 1 ccagccgagggactgtcatatgttagctgctgctgaaggggtagtctgaagtagatcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagccgagggactgtcatatgttagctgctgctgaaggggtagtctgaagtagatcacc 260
Query: 61 aagtgtgacaggagaaggatgggaaaggcaggcctaggacagcacaagaattatgtactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtgtgacaggagaaggatgggaaaggcaggcctaggacagcacaagaattatgtactt 320
Query: 121 attattacccatggcaagtcctgagctatggttagaatagtcctccaagtgtgtaataag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attattacccatggcaagtcctgagctatggttagaatagtcctccaagtgtgtaataag 380
Query: 181 gttacatgggtataggttgtggtaggcaaacaccaacagggctcactctattatacaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttacatgggtataggttgtggtaggcaaacaccaacagggctcactctattatacaaaa 440
Query: 241 ctggtcccctgaccaggaaccagtaattgccaacagttcagcagagagca 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggtcccctgaccaggaaccagtaattgccaacagttcagcagagagca 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
