BAC Information

Click to search

BAC

Clone NameMSMg01-172O20
ChromosomeX (Build37)
Map Location 63,416,481 - 63,416,828
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671840
Downstream geneSlitrk2, LOC666824, LOC627734
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172O20.T7 (MSMg01no172_o20.b1)MSMg01-172O20.TJ (MSMg01no172_o20.g1)
ACCAG368690AG368691
length732764
length of high quality
(start - end)
349 (379 - 727)294 (70 - 363)
definitionCHROMAT_FILE: MSMg01no172_o20.b1 PHD_FILE: MSMg01no172_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:29 2005CHROMAT_FILE: MSMg01no172_o20.g1 PHD_FILE: MSMg01no172_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AGTGAAAATAATCTGAAAAGATTAAAGTTCACCCCATTCATATGGAAGAA
ATAATCCCCCAAGAAGATATCATCTTAAACATGTGTAGACCAAACTTGGT
TCAGATAATTTTATAAAACAGACACTACTAGGCAATAAGCCACAGATTAC
CCACAACACAGTAATGGTAGTTAAATTTAATACCATTCTTATACAGAGCA
GACAAAACAAACAAAGAAAATGAGAACTAAAGGGCATCATTGTCCAAATA
GATCTAACAGATATTTTCAGATAATTTTTCTCAAGCATCACAGAATATAA
ATTATTCTTTTTTTCACCCATACTTACCCTATAATAGATCACAACCAGGA
TTACAAAGCAACCACCAGCAAACTTAGAAAAATCAAAATGACTTCAAGTA
TTCTATCTGACTAAAATGGAATTAAACAAAGAAAATAAAAACAAAAATAA
TATCAGGGCAGAAAATCAAAAGAAAGGGAGAAATTATATCACAACAACAA
AATAATAGAAACAACAAATATTTCTCAAATATAACTTTGAACATCAGTGG
TCTCAATTATTACATAAAAAGCTATAAATTAAAAAAACTCATACAATAAT
AAGATATTTTCTTCTGCTACATTCAAGAAACACATCTTACCATCAAGGGT
AGATAATATTTCATGTAAAAGTATGACAAAAT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGATTTTTCCAAGACTTTTATCATGAATGG
GTGATGGATTTTGTTAAATGCTTTCTCTGCATTTAACGAGATGATCATGT
GTTTTTTGTCTTTGAGTTTGTTTATATAATGAATTACGTTGATGGAATTT
CATATATTAAACCATCCCTGCATCCCTGGAAAGAAACATACTTGGCCAAA
TTGGATGGTTGTTTTGATGTGTTGTTGGATTTGGTTAGCAAGAATATTAT
TGAGTATTTTTGCATTGTTTCTCATAAGGAAAATTGGTCTGAAGTTCTCT
ATCTTTTTTTTTTTCTCTAGCAGGNCCCCANATAAGAGTAATTGTGGTTT
CTTAGATTGTCCCCCCAAAAAAAAAAAAAGTTTATGTGTGTGGGGGAGTT
TGTGAAGACTCGGAATTATATCTTTCTTTGATTTTTCTGATATATCTCCG
CTTCAAATTTTTCTGATCTTGCTCTTTTCCTGTTTTTCCTTACTATTATT
TTCTGTCTCCTCTTTCCTTCCTGTCCTCTTTCTTCCGTTTACTCTCCTGA
TTTCTCTCCGCCCCCTGATCTTACTCCCTGTTTACTCCTTCTATCCCGCC
TAAGTTTTTACCGCCCCATTCCCTCCTTTTTTCCCTCCTTTTTTCATTAT
TATTCTTACCCTCATTCCTTAACTTCCCTCTTGTTCGCCACTCCTCTTAT
CCCTTCTCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_o20.b1 MSMg01no172_o20.b1 CHROMAT_FILE:
MSMg01no172_o20.b1 PHD_FILE: MSMg01no172_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:29 2005
         (349 letters)



>mm_chrX_63416281_63417029
          Length = 749

 Score =  673 bits (348), Expect = 0.0
 Identities = 348/348 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctataatagatcacaaccaggattacaaagcaaccaccagcaaacttagaaaaatcaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctataatagatcacaaccaggattacaaagcaaccaccagcaaacttagaaaaatcaaaa 260

                                                                       
Query: 61  tgacttcaagtattctatctgactaaaatggaattaaacaaagaaaataaaaacaaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacttcaagtattctatctgactaaaatggaattaaacaaagaaaataaaaacaaaaat 320

                                                                       
Query: 121 aatatcagggcagaaaatcaaaagaaagggagaaattatatcacaacaacaaaataatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatatcagggcagaaaatcaaaagaaagggagaaattatatcacaacaacaaaataatag 380

                                                                       
Query: 181 aaacaacaaatatttctcaaatataactttgaacatcagtggtctcaattattacataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacaacaaatatttctcaaatataactttgaacatcagtggtctcaattattacataaa 440

                                                                       
Query: 241 aagctataaattaaaaaaactcatacaataataagatattttcttctgctacattcaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagctataaattaaaaaaactcatacaataataagatattttcttctgctacattcaaga 500

                                                           
Query: 301 aacacatcttaccatcaagggtagataatatttcatgtaaaagtatga 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacacatcttaccatcaagggtagataatatttcatgtaaaagtatga 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)