BAC Information

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BAC

Clone NameMSMg01-173G16
ChromosomeX (Build37)
Map Location 129,398,126 - 129,398,342
singlet/doubletsinglet
Overlap genenone
Upstream geneEG631264
Downstream geneLOC665846, LOC665850, LOC665854, LOC100040794, Pcdh19, LOC100040831, Tnmd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173G16.T7 (MSMg01no173_g16.b1)MSMg01-173G16.TJ (MSMg01no173_g16.g1)
ACCAG369029AG369030
length713710
length of high quality
(start - end)
239 (126 - 364)240 (124 - 363)
definitionCHROMAT_FILE: MSMg01no173_g16.b1 PHD_FILE: MSMg01no173_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:05 2005CHROMAT_FILE: MSMg01no173_g16.g1 PHD_FILE: MSMg01no173_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAACATATTCCACGGAAAAAAAGCATTTGGTTATGGTCTAACTAAC
TGTCTGTATGTAGAAAATTTACCCCAAATCCAAGTGGATCAAGAACCTCA
ACATAAAACCAAATACACTGAATCTAATAAGAAAAGACACTTGAACTCCC
TGACACAGGAAGAAATTTCCTATTCAGAACTCCAATATCTCAAGCTCTAA
GGCCAAGAATTCATATATGGGACTTCATAAAACTGAAAAGGTAAAGGATA
TAGTCAATAAGTAAAATAGGCAACCTACAAATAGGAAAATAAATCTTAAC
TAACCCAACATCCAATAGAAAGCTCATTATTCAAAATATATAAAGAACTC
AAGAAGGTAGCCACCAAAAAAAACCAAACAACCCAATCAAAAAATGTTGT
ATAGAACTAAACCGAGAATTCACAACTGAGGAATCTCGAATGGCTGAGAA
GCACCTAAAGAAATGTTCAATGTCCTTAGCCATCAGAGAAATACAAATCG
GAATGACTTTATATTCTACCTTCCACCAATCAGAATGACTAAGATCAAAT
CCTCGGGTGACAACACATGTTGGTGAGGATGTGGAAGAAAAATGAACACT
TCTCCATTGCTGGTGCGACTGTGAACTGGTACTACCTACCACTCTGGAAA
TCAATCTGGAGGN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGTCACAATTGAACACTAGGAATCT
CTTTCTGCCTCTCCAATTTACACCCTCCCCCTTTTAAATGTAAGCCTTGT
CTCTCAAATATATGTGAAAAATTTCAAATTTAGCTTTGTTTAGAATTTTA
TACATGAACATATTATTTTCACCTCTCGCTCTCCTCCCTCCAACTCCTCT
TATATTCCTATCTCAATTGCCTCTCAAATTCATGGACCCTTCATTTTTAT
TTTATTATCACATGCACACACACTCACACACACACACACACACACACACA
CACACACACACTTTTTTCAGTCATTGACTCTTTCACCATTCCCGTTAGGC
TGGTACATTTCTAGCTTCAAACATTTCCCTTAGTAACATGGGCCTGTTGA
AAGAAGTAGCTTTCAGTTCCTAGCTAAAACTATTCAGAATGGCTCTCTCT
ACATGGACTATAAAATTGGTATTTACATTCAAATTAATAGTAATACATTT
CCAAGTTCTCTGTATCTAAGTATGCCTTTGTTTGTTTACATTTAGCCTAT
TCGAGTTGTTTTTGTCTGCTAGAGCAAGTTGTTTCAGTCCAAGAAGAGTA
CTTCAGGGAATTAAAGTGGCATTTTCACAGTAAATTATCAGCTACCACAA
CGATTATGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_g16.g1 MSMg01no173_g16.g1 CHROMAT_FILE:
MSMg01no173_g16.g1 PHD_FILE: MSMg01no173_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:05 2005
         (240 letters)



>mm_chrX_129397965_129398604
          Length = 640

 Score =  391 bits (202), Expect = e-113
 Identities = 215/222 (96%), Gaps = 5/222 (2%)
 Strand = Plus / Minus

                                                                       
Query: 2   ctcccccttttaaatgtaagccttgtctctcaaatatatgtgaaaaatttcaaatttagc 61
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 378 ctcccccttttaaatgtaagccttgtctctcaaatacatgtgaaaaatttcaaatttagc 319

                                                                       
Query: 62  tttgtttagaattttatacatgaacatattattttcacctctcgctctcctccctccaac 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tttgtttagaattttatacatgaacatattattttcacctctcgctctcctccctccaac 259

                                                                       
Query: 122 tcctcttatattcctatctcaattgcctctcaaattcatggacccttcatttttatttta 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||     |||||
Sbjct: 258 tcctcttatattcctatctcaattgcctctcaaattcatggacccttcat-----tttta 204

                                                     
Query: 182 ttatcacatgcacacacactcacacacacacacacacacaca 223
           ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 203 ttatcacatgcacacacacacacacacacacacacacacaca 162


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)