BAC Information

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BAC

Clone NameMSMg01-173J04
ChromosomeX (Build37)
Map Location 163,229,131 - 163,229,413
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040753, Gemin8, Gpm6b, Ofd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912
Downstream geneLOC641660, LOC667791, EG667794, LOC100040850, LOC627268, Tmsb4x, Tlr8, Tlr7, Prps2, EG627311, Frmpd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173J04.T7 (MSMg01no173_j04.b1)MSMg01-173J04.TJ (MSMg01no173_j04.g1)
ACCAG369144AG369145
length595702
length of high quality
(start - end)
99 (41 - 139)283 (75 - 357)
definitionCHROMAT_FILE: MSMg01no173_j04.b1 PHD_FILE: MSMg01no173_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:16 2005CHROMAT_FILE: MSMg01no173_j04.g1 PHD_FILE: MSMg01no173_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTGACTTGAAAAATATGAACATCCATTTCTGATTTGTATATTTCCACAT
GGAAAATGGATCTGTTTTTTGTCATACTAAATTCTCAAGNAAAANNTTNT
NNTTTGGGGGGGGCGTTGGTGCCCAAAAAATACCNANNNNTGTGTCAATT
TTTGGTCATTAAAATTGGAGAAGGGGTCCTCAATAGGGAATTGGGTTTCT
CTCGGGGGAAGGGCAATTTTAAGTGGACAGCTTCTGACCAGGGGGAAGAA
TAATCTGGAGGGGCAAGCCCCTTAAAATTGGCCAGGTCCCGGGGAAACCC
CCCAACCCGGACCCTGGGGGGGAGCCCCGGGGAAAACCCCCCCGCGGGGC
CATTTTTTTTTTCCCCCCCCCCCCCCCCCCCCCAAAAAGTTTTTTTTGGG
GGAAAAAAAAATTTTTTTCCACGGGGGAAAAAAAAAAAAAAAAAAGGGGC
CACAAAGGGGGGGTTTTTGTAAAAAACCTCCCCCAAAAATGGGGGGGGAA
CCCCCCCCCCCAAAATACCGGGGGCACCCACAAAAAAAAACCCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGTCATGTAAATTAAGGCAGTCCTG
ATTGACCAATGTTAAATCCTGGGCAGAGCTTGACCTTAGAAGTTGACAGC
TCTGTGGTTGTGATTAATTTTGATTGGCCTCCCTTAGTTACATTGTTCTG
CTGCTCAGGGTTTTCCCAGAAAGGGGCTACTGTTTTCTTTATGGAAAGCA
TTATGGACCAGGCTTGCATTGTGGAAATTCCCTAACAAGGATTGTTCCCT
TTCTGGTCTCTCAATGATGGCCTTATTTCTAAAAGAAAATATAAACTTAT
TTTACTATTTTTTAGACCCGCCCCCCCTCTTCCTTTCAGAAAATCCTACT
GTTTTTAGTACTTACTATAACATTTGAATTCTATATTGGGCAGATTAATT
ATAGCTGTTTTTCTTTTTCTTTTTTGCCGTGCTAGGGATAGAACATGGGT
TTGCACATGCTAGAGGAAAGAAGCCTAGCACCGAGCTATATCCCCAGCTC
TAGACACATTAATTTTTCTTTTATGACATTCATTTATTTTTATTTAAAAT
ATTTTATTAGTTCTTTAAAAATTTTATGCAATACATTTTAATCATACATA
CCCCTTTCCTTCCCGCAGCTACTCCAAGATCCACCTCCACTTCCCTATGC
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_j04.g1 MSMg01no173_j04.g1 CHROMAT_FILE:
MSMg01no173_j04.g1 PHD_FILE: MSMg01no173_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:16 2005
         (283 letters)



>mm_chrX_163228931_163229613
          Length = 683

 Score =  524 bits (271), Expect = e-153
 Identities = 280/283 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtcatgtaaattaaggcagtcctgattgaccaatgttaaatcctgggcagagcttgac 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtcatgtaaattaaagcagtcctgattgaccaatgttaaatcctgggcagagcttgac 260

                                                                       
Query: 61  cttagaagttgacagctctgtggttgtgattaattttgattggcctcccttagttacatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttagaagttgacagctctgtggttgtgattaattttgattggcctcccttagttacatt 320

                                                                       
Query: 121 gttctgctgctcagggttttcccagaaaggggctactgttttctttatggaaagcattat 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttctgctgctcagggtttccccagaaaggggctactgttttctttatggaaagcattat 380

                                                                       
Query: 181 ggaccaggcttgcattgtggaaattccctaacaaggattgttccctttctggtctctcaa 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaccaggtttgcattgtggaaattccctaacaaggattgttccctttctggtctctcaa 440

                                                      
Query: 241 tgatggccttatttctaaaagaaaatataaacttattttacta 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatggccttatttctaaaagaaaatataaacttattttacta 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)