Query= MSMg01no174_m04.b1 MSMg01no174_m04.b1 CHROMAT_FILE:
MSMg01no174_m04.b1 PHD_FILE: MSMg01no174_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:42 2005
(688 letters)
>mm_chrX_22959305_22960392
Length = 1088
Score = 1220 bits (631), Expect = 0.0
Identities = 682/725 (94%), Gaps = 40/725 (5%)
Strand = Plus / Plus
Query: 4 ggaattcaacttcaagaacctattaactatcagatcctcagattctcaggtatgatctag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaacttcaagaacctattaactatcagatcctcagattctcaggtatgatctag 263
Query: 64 atgtttagctgttgtaacccttttaaagatgatttaataatgttgctagaattgtggaac 123
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgtttagctgttgtaaccattttaaagatgatttaataatgttgctagaattgtggaac 323
Query: 124 ccagtcccaagggatatatatctctctaaaacaactcctgcactgaaggttcagggatca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccagtcccaagggatatatatctctctaaaacaactcctgcactgaaggttcagggatca 383
Query: 184 cttcagaagaggggccaatactataagaaccagatcaggttttctgtggtatctcctagt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttcagaagaggggccaatactataagaaccagatcaggttttctgtggtatctcctagt 443
Query: 244 aatgtatctacgaggttgccaacaatagatatgccaaagtgtgtggtgggcgaataccca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aatgtatctacgaggttgccaacaatagatatgccaaagtgtgtggtgggcgaataccca 503
Query: 304 ggaggcatcaactctgaaaatacaatcagaaaacaattagttaacccaaaactgtctggc 363
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 504 ggaggcatcaactctgaaaatacaatcagaaaacaattagttaacccaacactgtctggc 563
Query: 364 tgctattataccactgagcagatcttgcctggcagactggtattgtagcattaaaagtcc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgctattataccactgagcagatcttgcctggcagactggtattgtagcattaaaagtcc 623
Query: 424 aacactgggtaaagcctctgtctcccaactcctgtgactaagcaatggtaacagcagaag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aacactgggtaaagcctctgtctcccaactcctgtgactaagcaatggtaacagcagaag 683
Query: 484 aaatagtctttgtcaggaaaaaactcacaaatattggatataaaatattcaatgttagtc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaatagtctttgtcaggaaaaaactcacaaatattggatataaaatattcaatgttagtc 743
Query: 544 aggaacacacacacatacacacatacacacacatacccataatgtaacaccttttgttac 603
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aggaacacacacacacacacacatacacacacatacccataatgtaacaccttttgttac 803
Query: 604 cacggaattatatatacatacaaatacacacacaca------------------------ 639
||||||||||||||||||||||||||||||||||||
Sbjct: 804 cacggaattatatatacatacaaatacacacacacacacacacacacacacacacacaca 863
Query: 640 ----------------gagagagagagagagagagagagagagagagagagagattcctg 683
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 cacacacagagagagagagagagagagagagagagagagagagagagagagagattcctg 923
Query: 684 agaat 688
|||||
Sbjct: 924 agaat 928
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 111
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space: 730884
Effective search space used: 730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no174_m04.g1 MSMg01no174_m04.g1 CHROMAT_FILE:
MSMg01no174_m04.g1 PHD_FILE: MSMg01no174_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:42 2005
(312 letters)
>mm_chrX_23043289_23043999
Length = 711
Score = 580 bits (300), Expect = e-170
Identities = 309/312 (99%), Gaps = 1/312 (0%)
Strand = Plus / Minus
Query: 1 accccagctaaaaacattgtttcagttttatgctaaatgctttcctttttaaactttata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 accccagctaaaaacattgtttcagttttatgctaaatgctttcctttttaaactttata 452
Query: 61 aagtatatttaaccatagaaatacctttaaaaatattaaatcctcagaatgccaaacaat 120
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 451 aagtatatttaaccatagaaataccttt-aaaatattaaatcctcagaatgtcaaacaat 393
Query: 121 ctgatccatatataagcagtcaggtggggctctatacactgcttaattcccaaaactgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctgatccatatataagcagtcaggtggggctctatacactgcttaattcccaaaactgtc 333
Query: 181 accaaaagttgtctagcaatgggagggaaggaggttgcctgaatcccaggttacactgat 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 332 accaaaagttgtctagcaatgggtgggaaggaggttgcctgaatcccaggttacactgat 273
Query: 241 acactggaggcttcaatttttttacttttctctctctctctcctgagttaaaatgctctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 acactggaggcttcaatttttttacttttctctctctctctcctgagttaaaatgctctt 213
Query: 301 ctcatcatgaga 312
||||||||||||
Sbjct: 212 ctcatcatgaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 711
Length adjustment: 9
Effective length of query: 303
Effective length of database: 702
Effective search space: 212706
Effective search space used: 212706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
