BAC Information

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BAC

Clone NameMSMg01-175E05
ChromosomeX (Build37)
Map Location 45,480,757 - 45,481,098
singlet/doubletsinglet
Overlap geneXpnpep2
Upstream geneEG434775, LOC236775, LOC100040133, LOC100040145, EG624187, Smarca1, LOC676253, Ocrl, LOC270596, LOC665672, Apln
Downstream gene1200013B08Rik, Zdhhc9, Utp14a, LOC637576, Bcorl1, Elf4, Aifm1, Rab33a, Suhw3, Slc25a14, Gpr119, Rbmx2, LOC665752, Gm595, EG637758, LOC100040295, Enox2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175E05.T7 (MSMg01no175_e05.b1)MSMg01-175E05.TJ (MSMg01no175_e05.g1)
ACCAG370305AG370306
length721735
length of high quality
(start - end)
375 (45 - 419)342 (71 - 412)
definitionCHROMAT_FILE: MSMg01no175_e05.b1 PHD_FILE: MSMg01no175_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:18 2005CHROMAT_FILE: MSMg01no175_e05.g1 PHD_FILE: MSMg01no175_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACTTCACTCTAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGAGGATGTGGAGAAAGAGGAACAGTCCTCCATTGCTGGTGGG
ATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAATTGGACATAGTACTACCGGAAGATCCATCAATACCTCTCCTGGGCAT
ATATCCAGATTATGTCCCCCCCCCCCCCAAGAACACATGCTCCACTATGT
TCATAGCAGCCTTATCCACAATAACCAGATGCTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGA
ATACTACTCAGCTATTTAAAAAATGAATTTATGAAATTCCTAGGCAAATG
GATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAAACACAAAGGA
ACTCGCACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTA
GGATACCCAAGATATAAGATACAATTTTGCTAAACACATGAAATTCAAGA
AGAACGAAGACCAAAGTGTGG
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATGAAAGTGAAGCCAGAGCCACCAGGTCC
AACTCACAATCATTAGCTGTAGTGGTTCCCCCAGACAGGCACAGAGCATA
CCCATCCCATGGGGGAGGCATGGAAAAAGGGTCCCAGGACTCTGGGGCTT
CTTGACAGTAGGTCATGGGGCATGGAGAACTTCTTCCTCGGGAGAGAAGA
GGAAGTGAGGTGACTATTTCCCTACCTCACCCTCTTCTAAGCATGCCCCA
ACCCAACACGCCTCCACAAATGTACTTCCTCTTTACAGCCATCTCAAGTT
CACACAGCATCAATCTAGTGAGAAGTACAGGCTGCTAAACTGAGCACATG
GCAAGCTGGCTCCCCCACAGGTGTGCTATGAACAAGAGCCTCTGTCCTTG
GTGCATTCCACGGGATAGAAGTTGGGAAACCCAATAAAACTGCGAATGAT
TAGCCACACATTTCAAAGGAATATGGTTAGCTCATTAGGCATGATTGTCA
CACTGGAACTGTGTAGGTTAACACTGTACAAAAGAATCACTTCTAAAGGG
CTTCGTCTTTTATCTGTCTCCATCTCCAACCTTACGTGGTCACTTCATCT
TGCCACAGGGAATGAGCTTGGTTTAACGACTCTGATGTGGGCTGCGTCTA
GGGCTCGCTTGAGTGGGGGAGGATATAGGTGCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_e05.g1 MSMg01no175_e05.g1 CHROMAT_FILE:
MSMg01no175_e05.g1 PHD_FILE: MSMg01no175_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:18 2005
         (342 letters)



>mm_chrX_45480557_45481298
          Length = 742

 Score =  661 bits (342), Expect = 0.0
 Identities = 342/342 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgaaagtgaagccagagccaccaggtccaactcacaatcattagctgtagtggttccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 catgaaagtgaagccagagccaccaggtccaactcacaatcattagctgtagtggttccc 483

                                                                       
Query: 61  ccagacaggcacagagcatacccatcccatgggggaggcatggaaaaagggtcccaggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ccagacaggcacagagcatacccatcccatgggggaggcatggaaaaagggtcccaggac 423

                                                                       
Query: 121 tctggggcttcttgacagtaggtcatggggcatggagaacttcttcctcgggagagaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tctggggcttcttgacagtaggtcatggggcatggagaacttcttcctcgggagagaaga 363

                                                                       
Query: 181 ggaagtgaggtgactatttccctacctcaccctcttctaagcatgccccaacccaacacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ggaagtgaggtgactatttccctacctcaccctcttctaagcatgccccaacccaacacg 303

                                                                       
Query: 241 cctccacaaatgtacttcctctttacagccatctcaagttcacacagcatcaatctagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cctccacaaatgtacttcctctttacagccatctcaagttcacacagcatcaatctagtg 243

                                                     
Query: 301 agaagtacaggctgctaaactgagcacatggcaagctggctc 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agaagtacaggctgctaaactgagcacatggcaagctggctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)