Query= MSMg01no177_a10.b1 MSMg01no177_a10.b1 CHROMAT_FILE:
MSMg01no177_a10.b1 PHD_FILE: MSMg01no177_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:30 2005
(568 letters)
>mm_chrX_50955338_50956305
Length = 968
Score = 1025 bits (530), Expect = 0.0
Identities = 556/566 (98%), Gaps = 4/566 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtcc--tgccatatattaagtagtacaagtgagactttcccaactctagggga 62
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtccagtg--atatattaagtagtacaagtgagactttcccaactctagggga 262
Query: 63 gtagagctgaaaaggggagaaggctatgtattattatggtgccaatcaagattgtattgg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtagagctgaaaaggggagaaggctatgtattattatggtgccaatcaagattgtattgg 322
Query: 123 ggatcattttggcaaaatccaataatggaattctggagacaatatgggatccaccacaaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggatcattttggcaaaatccaataatggaattctggagacaatatgggatccaccacaaa 382
Query: 183 gttgtagtgatcagaagccaaggggctgcagatttatacttgtccaccagttattaggta 242
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 383 gttgtagtgatcagaagccaaggggctgcagatttatacttgtcgaccagttattaggta 442
Query: 243 atattggctgctgtctttaattctcaggtgctcactagttgtctttacacgcaagatcta 302
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atattggctgctatctttaattctcaggtgctcactagttgtctttacacgcaagatcta 502
Query: 303 aaaatactgtggctcagtgacacagcttttggctacttagagaaaaaccacaaagaaact 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaaatactgtggctcagtgacacagcttttggctacttagagaaaaaccacaaagaaact 562
Query: 363 aaatgaccagaaaaactatcaagagaattcatgcctggtgctggagaaacagggctacta 422
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaatgagcagaaaaactatcaagagaattcatgcctggtgctggagaaacagggctacta 622
Query: 423 aagtcacagaccttggaagggaacctacaaccaccattttaataaaccagccaaatccat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aagtcacagaccttggaagggaacctacaaccaccattttaataaaccagccaaatccat 682
Query: 483 acctaacaacattctaagtatttattttttaatacccacagagaagtgtagtcctcaccg 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 683 acctaacaacattctaagtatttattttttaatacccacagagaagtgtagtcctcactg 742
Query: 543 ctgagcatggggactttattttgtaa 568
||||||| |||||||| |||||||||
Sbjct: 743 ctgagcagggggacttcattttgtaa 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no177_a10.g1 MSMg01no177_a10.g1 CHROMAT_FILE:
MSMg01no177_a10.g1 PHD_FILE: MSMg01no177_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:30 2005
(486 letters)
>mm_chrX_51076068_51076953
Length = 886
Score = 932 bits (482), Expect = 0.0
Identities = 485/486 (99%)
Strand = Plus / Minus
Query: 1 aacattttgccaagagtatgccttgataagaacccttggctcctccatagtctgtggttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aacattttgccaagagtatgccttgataagaacccttggctcctccatagtctgtggttg 627
Query: 61 tttctgtctgtttttaaaaacaaaattagaagtgacttgggggtcaagagaagcttgcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tttctgtctgtttttaaaaacaaaattagaagtgacttgggggtcaagagaagcttgcct 567
Query: 121 tccaaagtttggtactggtttcatcaccaccagtttgtggatgattagcatagagccatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tccaaagtttggtactggtttcatcaccaccagtttgtggatgattagcatagagccatt 507
Query: 181 tcatgggctctctggaagcctccagaagagattagcttaagttgttggaggaaaaactgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tcatgggctctctggaagcctccagaagagattagcttaagttgttggaggaaaaactgc 447
Query: 241 ttaagttttaagggttttaggtagatttgcactgctgtgccttaagtcaatataaagaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttaagttttaagggttttaggtagatttgcactgctgtgccttaagtcaatataaagaaa 387
Query: 301 accatttatttatgaccttgtgaagaatatatgctgaaagttctgtttgcactgtgacca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 accatttatttatgaccttgtgaagaatatatgctgaaagttctgtttgcactgtgacca 327
Query: 361 tctagctaatgaaagaacaatagatacattcctttttctttcttttttttgaaatcaaaa 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tctagctaatgaaaaaacaatagatacattcctttttctttcttttttttgaaatcaaaa 267
Query: 421 cttttattttatgactgaatgaaatcctcacgatgaactggatgctgcaacagctgccct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cttttattttatgactgaatgaaatcctcacgatgaactggatgctgcaacagctgccct 207
Query: 481 cttggg 486
||||||
Sbjct: 206 cttggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
