Query= MSMg01no179_f01.b1 MSMg01no179_f01.b1 CHROMAT_FILE:
MSMg01no179_f01.b1 PHD_FILE: MSMg01no179_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:18 2005
(452 letters)
>mm_chrX_136069565_136070422
Length = 858
Score = 828 bits (428), Expect = 0.0
Identities = 447/456 (98%), Gaps = 8/456 (1%)
Strand = Plus / Minus
Query: 4 ggaattctcagtctc-tctcagttgagac-aagtgtggggacctgagaaggaggtagctt 61
||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 584 ggaattctcagtctcttc-cagttgagacaaagtgtggggacctgagaaggaggtagctt 526
Query: 62 tcctggctcatggcttccctactttcggtttctatcaacatctagatcagttacattttc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tcctggctcatggcttccctactttcggtttctatcaacatctagatcagttacattttc 466
Query: 122 aaagttatgtctcatttcttttcttgttcttcatttttataaccacaactatatattcct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aaagttatgtctcatttcttttcttgttcttcatttttataaccacaactatatattcct 406
Query: 182 ggactcatcatcacatccacatttggaaatcattgggaaaagaaaaccatgcgactcttt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ggactcatcatcacatccacatttggaaatcattgggaaaagaaaaccatgcgactcttt 346
Query: 242 ctaattattatcttcagagttctttgttttggtgtctagattacaagattcttcct---- 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ctaattattatcttcagagttctttgttttggtgtctagattacaagattcttcctatag 286
Query: 298 -atagtatgtccttcactgatttagtcctttgactacttagactactttctgcctcttgc 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 catagtatgtccttcactgatttagtcctttgactacttagactactttctgcctcttgc 226
Query: 357 ttttgatgtagcacaccaaaactataacaggcccccagacactaactgactccatgatag 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 225 ttttgatgtagcacaccaaaactataacaggcccccagacactgactgactccatgatag 166
Query: 417 aagtgccacccaggctataaaactcagcacatagac 452
||||||||||||||||||||||||||||||||||||
Sbjct: 165 aagtgccacccaggctataaaactcagcacatagac 130
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 858
Length adjustment: 10
Effective length of query: 442
Effective length of database: 848
Effective search space: 374816
Effective search space used: 374816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_f01.g1 MSMg01no179_f01.g1 CHROMAT_FILE:
MSMg01no179_f01.g1 PHD_FILE: MSMg01no179_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:18 2005
(287 letters)
>mm_chrX_135954373_135955059
Length = 687
Score = 538 bits (278), Expect = e-157
Identities = 284/286 (99%)
Strand = Plus / Plus
Query: 1 cactgcgtgacacttcgggagcagatggcagctacagatactgggtttcgccacagctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactgcgtgacacttcgggagcagatggcagctacagatactgggtttcgccacagctga 260
Query: 61 gcaacttgggctacaaattcagtgcctttatatagcaagtagttaaccagccaatcattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaacttgggctacaaattcagtgcctttatatagcaagtagttaaccagccaatcattc 320
Query: 121 tcccgcagggagggaatgttggtacgacagtcctgctgtggtgtcatgtcagtaattttc 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tcccgcagggagggaatgttggtacggcagtcctgctgtggtgtcatgtcagtaattttc 380
Query: 181 ccttctccccagttcccatctagagccttaggatccatggctgcatatgttttcagggtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttctccccagttcccatctagagccttaggatccatggctgcatatgttttcagggtc 440
Query: 241 tatgccagcatgtctaatctgcatttgaacttcacacacacacaca 286
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgccagcatgtctaatctgcatttgaacttcacacacacacaca 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
