BAC Information

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BAC

Clone NameMSMg01-181G06
ChromosomeX (Build37)
Map Location 155,696,921 - 155,697,225
singlet/doubletsinglet
Overlap geneRps6ka3
Upstream geneLOC436243, LOC100040371
Downstream geneEif1ay, Mtap7d2, A830080D01Rik, LOC100041359, Sh3kbp1, LOC667524, Pdha1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181G06.T7 (MSMg01no181_g06.b1)MSMg01-181G06.TJ (MSMg01no181_g06.g1)
ACCAG374581AG374582
length690688
length of high quality
(start - end)
305 (384 - 688)286 (80 - 365)
definitionCHROMAT_FILE: MSMg01no181_g06.b1 PHD_FILE: MSMg01no181_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:51 2005CHROMAT_FILE: MSMg01no181_g06.g1 PHD_FILE: MSMg01no181_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATCTAATTATTTAGGAAGTGATTTTGATTTTTTAAATCTT
CTAATAACCCTCACTTTGCTTCTACACCACTTCATTATCCTAAATTTGCC
TTAAACATTTGGCCTAGTTCTAGCCTATCATGCTATGACCCATGTTTGAG
TTCAACCACAAGGGTTTTTTTGTTTTGAACACCATGAGACTTGTGTGAGG
TCTTAAAGCAGGAAGGGTGGTGTGAAGGAATAAGAAACTGTCTGTGTTTT
TAGAGGCACTCAGGTCTTCTAAAACTGTTCATACTTCAATGAGGAATTAA
AATGATAAGAACAGATATAAGAGTCATACACCACCTTATTCCCTACCTTC
ACGATTCATTTAGCAGACATTTACTGAGTTCATAATATGTATGTGCCAGG
CATTGTGTTAACTGTTGAGGATTCAGAGAAATAAGAGTGTTTGTTTTCAA
GAGCTCAGTCTAACTAGCAATGAGACCATAAATGCAATCCTATATAGACA
AACCTAAAATCTTTTAGCATGGAGAGAAAATTTCTGATGCATTTGCTCAA
GTAAATATTTCTTTGGAAACCCGGATGTTTTTCTGGTAAAATACAGTTAT
TCCCTGATGTGAATCTACTGACAAGAAGATGGCATAATAA
NCATCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAAAAATACCGAATG
GCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGA
GGAACACTCCTCCATTGCTGGTGGGATTGCAGGCTTGTACAACCACTCTG
GAAATCAGTCTGATGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGG
ATCCAGCAATACCTCTCCTGGGCATAACCCACAAGATGCCCCAACTGGTA
AGAAGGACACATGCTCCACTATGTTCATAGAAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTG
AGTGAGGTAACCCAATCACAAAGGAACTCANACAATATGTACTCACTGAT
AAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_g06.b1 MSMg01no181_g06.b1 CHROMAT_FILE:
MSMg01no181_g06.b1 PHD_FILE: MSMg01no181_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:51 2005
         (305 letters)



>mm_chrX_155696572_155697276
          Length = 705

 Score =  582 bits (301), Expect = e-171
 Identities = 304/305 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttattccctaccttcacgattcatttagcagacatttactgagttcataatatgtatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ccttattccctaccttcacgattcatttagcagacatttactgagttcataatatgtatg 595

                                                                       
Query: 61  tgccaggcattgtgttaactgttgaggattcagagaaataagagtgtttgttttcaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tgccaggcattgtgttaactgttgaggattcagagaaataagagtgtttgttttcaagag 535

                                                                       
Query: 121 ctcagtctaactagcaatgagaccataaatgcaatcctatatagacaaacctaaaatctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ctcagtctaactagcaatgagaccataaatgcaatcctatatagacaaacctaaaatctt 475

                                                                       
Query: 181 ttagcatggagagaaaatttctgatgcatttgctcaagtaaatatttctttggaaacccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ttagcatggagagaaaatttctgatgcatttgctcaagtaaatatttctttggaaacccg 415

                                                                       
Query: 241 gatgtttttctggtaaaatacagttattccctgatgtgaatctactgacaagaagatggc 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 414 gatgtttttctggtaaaatacaattattccctgatgtgaatctactgacaagaagatggc 355

                
Query: 301 ataat 305
           |||||
Sbjct: 354 ataat 350


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)