XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGGAATTCTA
CTGAGAGTGCCTCTATCTGCATCAGCACACTCAATATTGATAATATATTT
CATCTAAATAGGAAAACAATTGAATAGTAAGTATATTATACTTTGAAACG
AGAAATGAAGGCTATCATTTCTCCAAACTTGAGCATTTGGCTATACAACA
AAATGTGATTTATCAGATAGTTTGAGCCAAATAGTTAATATACTATTTCA
TTATTCCCCTAAACTGTCAAGTATTTGCATAAAGTGTAAAAAAATCAAAG
TGATAGAGATGATTCAAGTATTAGGTACTCTACATGTGCAGCAGTGATGA
GTGACCTAGTTTTTGGTTTTGTCATTATATAGCTTTAGCTCAAATAAGAA
AATAGCAACAAAACAGCTAATAAAATATATGCATTTCAAAATCCAGCCAC
AGGATACTAATATTCTCAATATTTCCTATTATACAAAACTGTAAACAACT
GTTTTTTCTAAAATTTTAAATAATTACCCTATTCTATCACTCATAATTCT
GTCTAGTATATATATATATATATATATATATGTGCGTGTCTCTTNCNCTT
TTCTACTTTTTTTTTCCCCCTTCTTCTTTCTTTCTTCCCCTCTTTTCCTT
TCCCCCCTTCTTTCTTTTTTCCCTACTTCTTCCCCTTATTTACTTTTCCC
TTTTTCTTTTTCCCTTTCCTTTCTTTTTCCCTTTATTTCTCTTTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTTAAATGG
GGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATACTG
ATTTATATATATCTGATATATATATATATCTGATTTTTATATGTCAGGTA
TATATATATATATATATATATATATATATATATATATATATATATGTGAG
ATAAAAAATAGATATATATATATATATTATATATATATATATATATATAT
ATATAGAGAGAGAGGGTGTTGGAGAGAGAAAAATATATATATATATATAT
ATGTGTGTGTGAGACACACACACACGCGCGCGTGTTTTTTTAGTGCGTAT
ATACATATATACACCCCCGGGTGTGGGCGCGCGTTTATCTTCCTTTTTGG
TGGGGGGGGATATATATATATATATTTATCTCCCTTTTCTCCTCTCCCTT
TTTATTGTTAATGGTTGTTCCCTGTCTCTGTATCCTTTTTCTTATTCTGC
TCGTATCCCTTCTTCCTTTTCCTTATTATTCTTTCCTGCTCCTTTAATTC
TTTTGTTCTTTCTTCCCCTATTTATCCCATTATTCTTTCCTTTTTTATCC
CCTTTGTTCCTTTTTTCGCTTCTTTCGTGTTTTCTTTTTTTTTTCTTCTC
CACTATTTTTTTTTTATATACTTCTATCTATTGTTCTATTATAGTGTTCT
AAA

Query= MSMg01no181_k17.b1 MSMg01no181_k17.b1 CHROMAT_FILE:
MSMg01no181_k17.b1 PHD_FILE: MSMg01no181_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:11 2005
         (558 letters)



>mm_chrX_40774755_40775712
          Length = 958

 Score = 1027 bits (531), Expect = 0.0
 Identities = 537/539 (99%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattctactgagagtgcctctatctgcatcagcacactcaatattgataatatatttca 75
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattctactgagagtgactctatctgcatcagcacactcaatattgataatatatttca 275

                                                                       
Query: 76  tctaaataggaaaacaattgaatagtaagtatattatactttgaaacgagaaatgaaggc 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tctaaataggaaaacaattgaatagtaagtatattatactttgaaacgagaaatgaaggc 335

                                                                       
Query: 136 tatcatttctccaaacttgagcatttggctatacaacaaaatgtgatttatcagatagtt 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tatcatttctccaaacttgagcatttggctatacaacaaaatgtgatttatcagatagtt 395

                                                                       
Query: 196 tgagccaaatagttaatatactatttcattattcccctaaactgtcaagtatttgcataa 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tgagccaaatagttaatatactatttcattattcccctaaactgtcaagtatttgcataa 455

                                                                       
Query: 256 agtgtaaaaaaatcaaagtgatagagatgattcaagtattaggtactctacatgtgcagc 315
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 agtttaaaaaaatcaaagtgatagagatgattcaagtattaggtactctacatgtgcagc 515

                                                                       
Query: 316 agtgatgagtgacctagtttttggttttgtcattatatagctttagctcaaataagaaaa 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 agtgatgagtgacctagtttttggttttgtcattatatagctttagctcaaataagaaaa 575

                                                                       
Query: 376 tagcaacaaaacagctaataaaatatatgcatttcaaaatccagccacaggatactaata 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tagcaacaaaacagctaataaaatatatgcatttcaaaatccagccacaggatactaata 635

                                                                       
Query: 436 ttctcaatatttcctattatacaaaactgtaaacaactgttttttctaaaattttaaata 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ttctcaatatttcctattatacaaaactgtaaacaactgttttttctaaaattttaaata 695

                                                                      
Query: 496 attaccctattctatcactcataattctgtctagtatatatatatatatatatatatat 554
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 attaccctattctatcactcataattctgtctagtatatatatatatatatatatatat 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)