BAC Information

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BAC

Clone NameMSMg01-181N24
ChromosomeX (Build37)
Map Location 122,667,114 - 122,667,454
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665463, EG665522, LOC100038969, LOC100038978, EG665579, EG665611, EG626048
Downstream geneLOC100040410, LOC100039903, LOC665679, 4932411N23Rik, Gm381, LOC100040472, Gm382
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181N24.T7 (MSMg01no181_n24.b1)MSMg01-181N24.TJ (MSMg01no181_n24.g1)
ACCAG374923AG374924
length736731
length of high quality
(start - end)
293 (77 - 369)590 (47 - 636)
definitionCHROMAT_FILE: MSMg01no181_n24.b1 PHD_FILE: MSMg01no181_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:27 2005CHROMAT_FILE: MSMg01no181_n24.g1 PHD_FILE: MSMg01no181_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:27 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGACAACCAGGGCTAAACAGAG
AATCCCTGCCTCGAAAAAACAAAAAACACATAAACAAATAAAGAGAAAAT
GAATGACACACAGGCATACAGAAGAGGACTGGTCCCAAAGACAGCTCTGT
CCTAAATATACTAGAGCACATTGCTTCACAAAATGAATTCTGAACATGCT
CTCACATAGGGCATTTGAGTATACTTTCTAGGTTAACCCCATATGATCAC
AAGAAACAAAAGGTAACAAGAAGATCAGAGTCAGAAGTATATCTCAGACT
CATGTCAAAGACAGTCTGTTTTATCACACCATGCTTCAGTTTTCAAAGTT
CCAGAGAGTGGTTCTCCACATTTTTAATACTGCTGATCCTTCATATATAT
ACTTCCTTATGCTGTGTGGTGCCCCAACCGTAAAAATAGTTTTTGCTGCT
TCATAACTGAAATGTCCTACTGATATGAATTATAACATACATTTCTGACA
TACAGATAGTCTAGGACAACTCCTGTGAAATTTGTCACAAGTACTAGCAA
CCTATAGGTTGTCTATCACAGTGCCAGCACCTAGGATAATTATTCAGCCC
CTTGATTTTTACAATGTTGTCTTCCGTATCTGTGCCAGAACCCACGCGCT
CTATTTTATTGTTTTTATCTTGTTACGATTTGTAAA
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTAAAACTCTCGGAATTTGGGGCACCTGTGAGGAATTTTTTTT
CCTGATTTGATTATGTGAAATAGGAACACCAACCCCAAATGTAGATCGTT
TGTTCTGTTGTAGAAACAACTCTAAAATATAAATTTCATTGATGTCAGTT
TTTTAATAAAAGTGTGTAGCTAGGACTAAATTCTAGTAGTTACAATGAAG
ATAGTTTTTATGATCCTACACTGTTTCTGTCTTTTATTACAGTGTTTCCT
GAACACTGAGGTGGAGATTTGATGGTGACCTCCCTTGTAGGACTGAATGT
TAGAAGGTCCCTCAGGCTTTGCATATTATCTGGCTGGTAGATTAGAAAGG
AGATGGTTACAAGCAAAATTGGATGGATGAGCAGTTAGGCATTCCAAAGA
GCAAATGGTGCTTGACTAACCTCGTAAGCTATCTCCCTCTATTCTCTGGG
ACTGGTTGTTGCTAGTCTATTTCTGTTTGTCCTTATATATCAGATTGATA
TTTCCCAAGTGTTGTTCCTCCATGCCCAGAACCCTTATTTTTAGTCTTAT
ACCTGAACAAGCTTCCTTTCATTTTCAGCTGATCTGCTCAGGTTTCAGTA
TTAAAGAGCATCTCAGCAGATCTTGTTATTCTATAACCCTGCCACTCCTA
TTGCTGCTGCCTTCCAACTAGCATGTCTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_n24.g1 MSMg01no181_n24.g1 CHROMAT_FILE:
MSMg01no181_n24.g1 PHD_FILE: MSMg01no181_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:27 2005
         (590 letters)



>mm_chrX_122666915_122667904
          Length = 990

 Score =  474 bits (245), Expect = e-138
 Identities = 317/343 (92%), Gaps = 8/343 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactaaaactctcg-gaatttggggcacctgtgaggaa----ttttttttcctg 58
           ||||||||||| |||||| | ||| |||||||||||||||||||    ||||||||||||
Sbjct: 200 ggaattcactagaactct-gagaaattggggcacctgtgaggaattttttttttttcctg 258

                                                                       
Query: 59  atttgattatgtgaaataggaacaccaaccccaaatgtagatcgtttgttctgttgtaga 118
           |||||||||||||| |||||||  |||||||||||||||||||||||||| |||| ||||
Sbjct: 259 atttgattatgtgagataggaagtccaaccccaaatgtagatcgtttgttttgttataga 318

                                                                       
Query: 119 aacaactctaaaatataaatttcattgatg-tcagttttttaataaaagtgtgtagctag 177
           |||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 319 aacaactctacaatataaatttcattgatgct-agttttttaataaaagtgtgtagctag 377

                                                                       
Query: 178 gactaaattctagtagttacaatgaagatagtttttatgatcctacactgtttctgtctt 237
           |||||||||||||||||| |||| ||||| |||||||||||| || ||||||||||||||
Sbjct: 378 gactaaattctagtagtttcaatcaagatcgtttttatgatcttatactgtttctgtctt 437

                                                                       
Query: 238 ttattacagtgtttcctgaacactgaggtggagatttgatggtgacctcccttgtaggac 297
           ||||||||||||| ||||| |||||||| ||||||||||||||||||||| |||| ||||
Sbjct: 438 ttattacagtgttccctgagcactgagggggagatttgatggtgacctcctttgtgggac 497

                                                      
Query: 298 tgaatgttagaaggtccctcaggctttgcatattatctggctg 340
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgaatgttagaaggtccctcaggctttgcatattatctggctg 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)