BAC Information

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BAC

Clone NameMSMg01-182F01
ChromosomeX (Build37)
Map Location 90,374,680 - 90,509,413
singlet/doubletdoublet
Overlap geneLOC100042663, Rp23-438h3.2
Upstream geneMageb18, EG436259, EG668061, EG546347, LOC629568
Downstream geneArx, Pola1, EG629581, Pcyt1b, Pdk3, EG668103, LOC100042041, AU015836, EG245516, LOC100042062, EG629591, Zfx, Eif2s3x, Klhl15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182F01.T7 (MSMg01no182_f01.b1)MSMg01-182F01.TJ (MSMg01no182_f01.g1)
ACCAG375233AG375234
length721712
length of high quality
(start - end)
571 (46 - 616)234 (126 - 359)
definitionCHROMAT_FILE: MSMg01no182_f01.b1 PHD_FILE: MSMg01no182_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:01 2005CHROMAT_FILE: MSMg01no182_f01.g1 PHD_FILE: MSMg01no182_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,374,680 - 90,375,246)(90,509,180 - 90,509,413)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCAATCTTGCTAGATGTTCTAATGAATGCCTTTTTTCTCATCCT
GCTTTAAAACAGAGCTTGTGTTCAAAGCTTTCTTCATGCACAAAGTGATA
AGACCCATGGGGCCACCCTGGATTGTTTTATGCCAAGAAAATAAGAGAAG
GAATGTGGGCCCTTCTCTTTTAATAGCTCAATGGTTATGATCCAATTATT
TCAGAGAGCTAAGTTATTTATATTTTATCTACCCTTTAAATTAGGTAAAT
TCTAAGGCTATTTGATTGCAAGAATGCATTAATTCTCCATAGAGAAATGT
GATTTTCTTTGTTCAAAATTCAATGCACTATCCATTATTCCTTTTTGTAT
AGAATTTCTTGTTTGTCCCATTAGTGTCTGGCCCAACAAAAGAGGAGGGT
AAAATCTCTGGCAGACATAGTCGACTTGCCTTGGCCACAGCCCTGCCCCA
CTGTTTTTGCTTATAGACTCCTATAACTATCAATGAACCAAAAATAGACT
GGAGGCATGTTAGAACCTAGGAGGATTGTGCCTGGTTTCCTATTTCTTCT
AGTTGAGTTGCTGAAAGCCAAAAGTGTATACTAATTTGTATCACCTGTGG
ATGTGCCTATACTAAAACATGCTCATAAATTATTTGAGGGCACTCCCATC
CATTATACAATCAACCCATAN
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTATTCACCATTATGGTATTGCT
ACTGACCAAGAAACCTTCTTTCCAGCCAAAGAAGGGCAGCAGTGTGTTCA
TACTCATTGACTGAAACTGCTATTGGGTTCTCAGTATCTCTGGTAGGTAC
ACAATAATTATTAATACTCTTACACAGTATCTATCTTATAAACTAGTTCT
GTTCTTTTAAAGAACCATGCATATTATAGGGGAGTACTAACCTGTATTAT
GTTGGTGGGCATGATGGGCAAGTATTAGGTAGAGAGAGAAGGTTGTCTAA
GGGTTTTGAATTTTGAAAAATCGCCACCTTCTTCACAGAACTGAGAGAGG
GCCAGTTTGACCAAGTTCACCGCAAGAGATACTAGAAGAACTTCAGAACC
TGATTAAGGATACAAAATAACGAGAATCTGTTGAAAAACGGTGAGCCAAG
AAAACAACTAGAAAGGTCAAAATGTGCATGTGACGACATCAGCAAAGAAG
CTAAGTGTCGAGTCTAGGATGATAATGGTGTTTGAATGGACCATTGTGTG
TTAGACGTTAAACAAAGCATCTAATACGTGCTATGTCAGGCATCCTCTCA
AGCCTTGTTTTATGTCTGCGGTATAAGGATTACACTTGTCACTCGCATTT
GCCACTACCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_f01.b1 MSMg01no182_f01.b1 CHROMAT_FILE:
MSMg01no182_f01.b1 PHD_FILE: MSMg01no182_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:01 2005
         (571 letters)



>mm_chrX_90374476_90375446
          Length = 971

 Score = 1073 bits (555), Expect = 0.0
 Identities = 564/567 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcaatcttgctagatgttctaatgaatgccttttttctcatcctgctttaaaa 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcaatcttgttagatgttctaatgaatgccttttttctcatcctgctttaaaa 264

                                                                       
Query: 65  cagagcttgtgttcaaagctttcttcatgcacaaagtgataagacccatggggccaccct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagagcttgtgttcaaagctttcttcatgcacaaagtgataagacccatggggccaccct 324

                                                                       
Query: 125 ggattgttttatgccaagaaaataagagaaggaatgtgggcccttctcttttaatagctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggattgttttatgccaagaaaataagagaaggaatgtgggcccttctcttttaatagctc 384

                                                                       
Query: 185 aatggttatgatccaattatttcagagagctaagttatttatattttatctaccctttaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatggttatgatccaattatttcagagagctaagttatttatattttatctaccctttaa 444

                                                                       
Query: 245 attaggtaaattctaaggctatttgattgcaagaatgcattaattctccatagagaaatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attaggtaaattctaaggctatttgattgcaagaatgcattaattctccatagagaaatg 504

                                                                       
Query: 305 tgattttctttgttcaaaattcaatgcactatccattattcctttttgtatagaatttct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgattttctttgttcaaaattcaatgcactatccattattcctttttgtatagaatttct 564

                                                                       
Query: 365 tgtttgtcccattagtgtctggcccaacaaaagaggagggtaaaatctctggcagacata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtttgtcccattagtgtctggcccaacaaaagaggagggtaaaatctctggcagacata 624

                                                                       
Query: 425 gtcgacttgccttggccacagccctgccccactgtttttgcttatagactcctataacta 484
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 625 gtcgacttgccttggccacagccctcccccactgtttttgcttatagactcctataacta 684

                                                                       
Query: 485 tcaatgaaccaaaaatagactggaggcatgttagaacctaggaggattgtgcctggtttc 544
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 685 tcaatgaaccaaaaatagactggaggcatgttagaacctaggagaattgtgcctggtttc 744

                                      
Query: 545 ctatttcttctagttgagttgctgaaa 571
           |||||||||||||||||||||||||||
Sbjct: 745 ctatttcttctagttgagttgctgaaa 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no182_f01.g1 MSMg01no182_f01.g1 CHROMAT_FILE:
MSMg01no182_f01.g1 PHD_FILE: MSMg01no182_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:01 2005
         (234 letters)



>mm_chrX_90508980_90509613
          Length = 634

 Score =  445 bits (230), Expect = e-129
 Identities = 233/234 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaaagaagggcagcagtgtgttcatactcattgactgaaactgctattgggttctcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ccaaagaagggcagcagtgtgttcatactcattgactgaaactgctattgggttctcagt 375

                                                                       
Query: 61  atctctggtaggtacacaataattattaatactcttacacagtatctatcttataaacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 atctctggtaggtacacaataattattaatactcttacacagtatctatcttataaacta 315

                                                                       
Query: 121 gttctgttcttttaaagaaccatgcatattataggggagtactaacctgtattatgttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gttctgttcttttaaagaaccatgcatattataggggagtactaacctgtattatgttgg 255

                                                                 
Query: 181 tgggcatgatgggcaagtattaggtagagagagaaggttgtctaagggttttga 234
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgggcatggtgggcaagtattaggtagagagagaaggttgtctaagggttttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)