BAC Information

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BAC

Clone NameMSMg01-183G09
ChromosomeX (Build37)
Map Location 89,934,621 - 90,101,750
singlet/doubletdoublet
Overlap genenone
Upstream geneMageb5, LOC673766, LOC633484, LOC674396, EG278087, Mageb1, EG236892, EG236893, Mageb18, EG436259, EG668061, EG546347, LOC629568
Downstream geneLOC100042663, Rp23-438h3.2, Arx, Pola1, EG629581, Pcyt1b, Pdk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183G09.T7 (MSMg01no183_g09.b1)MSMg01-183G09.TJ (MSMg01no183_g09.g1)
ACCAG376003AG376004
length713782
length of high quality
(start - end)
313 (46 - 358)111 (71 - 181)
definitionCHROMAT_FILE: MSMg01no183_g09.b1 PHD_FILE: MSMg01no183_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:24 2005CHROMAT_FILE: MSMg01no183_g09.g1 PHD_FILE: MSMg01no183_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,934,621 - 89,934,929)(90,101,642 - 90,101,750)
sequence
TCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATATTATATTTGAAGCTCTTCAGAGACTTTAAATAAAGGAACATT
GGCAAGCATATGATGATGTAAACCGATCATTTGTTTATACAGAAAATATA
TAGAGTACAAAAATATACACAAATTTTAGTCCATATAACTAATTCAACCA
AATGCCTAAAGCAGGCAGCTTAGATTTGAGAACAACTTCCTGTGTGCCAC
TCCATAGATCACAAGGGTTGATTTGGTAAATCTGTTTTGCAAGTGTTTCC
TTCTTTCATAAGTATTTCTCCAGAAGCTATGTAATTCGTCAGGGGAGGGA
CACACATTTCTCTTTTTTAACACACACCAACCAACCAAGCTTTGGGGCTT
ATCCATTTTTCATGATGCCCACCAAATTTCTTTGCAATCTACCAGTTTTT
CAAACCCCACCACCATAAAACTTATTGTTACTATCTCGACATTATTGATT
AAAAGTAATTGCAATGATTTATATCAGTAACTGCATTGAGTTGACTATTC
TTCTAATTTCATATTACTTTTTTACTTTATAACAAAACATAACAATTATA
ACACTGCAAATATTTGACAGTAGTCACTATTTCTGTCATTTCCCTTCTCA
GAGAACTTTTCCACTGCAAATGATGATCATGCATCCTATTATATATAATC
CCTGCGATAAATN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGAATAAAATTTTAATGTCAAACTTCTGGT
ATAAATCAAACAACTATTGTTACATTGCAGCCCTTGTCCTCATCATGTTT
GGGTATTTAATGTTGTGAGTTTTTTTTTTGCCCCCCCCTTTCTCTTTTCT
TTTTTTTTCTTCCCCCCCTTCTCCCCCCTTTTTCCCCCTTTTCTCCCCCC
CTCTTTTTTTTTCCCTTTCTATATTACAACCCCCTTCCCTTACCCCTAAT
CTTTTTTTTTTTCCTTATTTTTCTTCCCCTACACCATTCCAAATACATTA
CCCCCAATCATTACCCTCTCTATTTTCTTTCTACTTTATCTTCCTATTTC
TCCCCCCCCTTGCTTTATACTTTTTCATCCCTTTTATCTTTCCACTCTCT
TTTCTTCCCCCACCCCCTTTCCTCTTATTTCTTTTCTTCTCTTCCTCCCC
TTTCTTTTTTTTCTCCATTATCCCCCTTAATTTCGTCATTTCCTTCCTTA
TTACACAACACGCTGACTCCCCTCTTTTACCTTTTTTCCTCCCTTTTTTT
CTCTCCTCCATCCCTCTTCCCCCCCCCACTCTATCCTCTCCCCCCATCTT
TACTCCTCACTTTCTACTTCTATTCCCTCCTTTTTTTTCTTTTCCTTTTT
CTCTATTTTCCTACCTTGTAAGATGACTAATTATTTTCAAATTAATCTAT
CTTTTTTCATTATTTGTTTTACACTTCAACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_g09.b1 MSMg01no183_g09.b1 CHROMAT_FILE:
MSMg01no183_g09.b1 PHD_FILE: MSMg01no183_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:24 2005
         (313 letters)



>mm_chrX_89934417_89935129
          Length = 713

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatattatatttgaagctcttcagagactttaaataaaggaacattggcaagcat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatattatatttgaagctcttcagagactttaaataaaggaacattggcaagcat 264

                                                                       
Query: 65  atgatgatgtaaaccgatcatttgtttatacagaaaatatatagagtacaaaaatataca 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgatgatgtaaacagatcatttgtttatacagaaaatatatagagtacaaaaatataca 324

                                                                       
Query: 125 caaattttagtccatataactaattcaaccaaatgcctaaagcaggcagcttagatttga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaattttagtccatataactaattcaaccaaatgcctaaagcaggcagcttagatttga 384

                                                                       
Query: 185 gaacaacttcctgtgtgccactccatagatcacaagggttgatttggtaaatctgttttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaacaacttcctgtgtgccactccatagatcacaagggttgatttggtaaatctgttttg 444

                                                                       
Query: 245 caagtgtttccttctttcataagtatttctccagaagctatgtaattcgtcaggggaggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caagtgtttccttctttcataagtatttctccagaagctatgtaattcgtcaggggaggg 504

                    
Query: 305 acacacatt 313
           |||||||||
Sbjct: 505 acacacatt 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no183_g09.g1 MSMg01no183_g09.g1 CHROMAT_FILE:
MSMg01no183_g09.g1 PHD_FILE: MSMg01no183_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:24 2005
         (111 letters)



>mm_chrX_90101442_90101952
          Length = 511

 Score =  211 bits (109), Expect = 1e-59
 Identities = 109/109 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaataaaattttaatgtcaaacttctggtataaatcaaacaactattgttacattgcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agaataaaattttaatgtcaaacttctggtataaatcaaacaactattgttacattgcag 250

                                                            
Query: 61  cccttgtcctcatcatgtttgggtatttaatgttgtgagtttttttttt 109
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cccttgtcctcatcatgtttgggtatttaatgttgtgagtttttttttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 111
Length of database: 511
Length adjustment: 8
Effective length of query: 103
Effective length of database: 503
Effective search space:    51809
Effective search space used:    51809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)