BAC Information

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BAC

Clone NameMSMg01-183N12
ChromosomeX (Build37)
Map Location 154,142,597 - 154,321,662
singlet/doubletdoublet
Overlap geneSmpx, Klhl34, Cnksr2
Upstream geneLOC434885, Phex, Gm1947, Sms, LOC100041181, EG625253, Mbtps2, LOC100040239, LOC667460, LOC667465
Downstream geneEG667483, LOC671033, LOC667487, LOC436243
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183N12.T7 (MSMg01no183_n12.b1)MSMg01-183N12.TJ (MSMg01no183_n12.g1)
ACCAG376310AG376311
length696746
length of high quality
(start - end)
418 (13 - 430)282 (76 - 357)
definitionCHROMAT_FILE: MSMg01no183_n12.b1 PHD_FILE: MSMg01no183_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:58 2005CHROMAT_FILE: MSMg01no183_n12.g1 PHD_FILE: MSMg01no183_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,321,361 - 154,321,662)(154,142,597 - 154,142,877)
sequence
CTCTCTATCGGGAGAGGATCCGCGGAATTCTCTGATCTCCACCTAGTGTT
TGGCTGTAGGTCTTTATTTCTGCTCCTATCAGTTGCTGGATGAAGCCCCT
TTAGTGACAATTGGGCTTTTGCCAGTTGTATTTGGATCTATCCTAGGTTG
GGCTGTCCAGCCTTTGGTCTAGACAGTGTCAGGCGTGAGCTCCCTCTTGT
GGGTGGACCTCAAGTTGGACCATTATTGGTTGGCCACTCCCACAAGTTCT
AGACCACCATTACTCCAACATGTCTTGCAGACAGGAAAAACTGTAGGTTG
AAGGTTTCTGTGGCTGGGTTGGTATCCCAGGAACTGAGGTTTGAACATCA
GTGTTCTAACTCTTCATCAGCATTTTAACAACTCCCCCCAACAAACCTAA
CTTTAGCAGAAATTTAACAATTCTAGTAGCGCTCACTATCTGTAAATGCT
ACCAATCTCCAGTCTAAGTGCTACAGAATACAGAGAAGCTGATAAATACT
TTATCTCTTCTATCACTAAATAGTAGCCTATCTTATCCTAATTACTTTTG
CTCCTTATACTTCTAGCTTATTGTTAAATCCTCCTATATATCCCATATTA
CTGGCTCTGCTCATACCCTTTCCTGTATGTTGTTTTTTTTTTTATCCCCC
CCATCTTTTTCTGTCCCTCCTTATATTTCTACCCACTTTTTTTTCN
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAAGTGGCGGGATGTATGCCAGTC
TCTGGAAACCTGTCACTGAGCAAGCCCAAGGAGGAGCTGATGCATTTGGA
AGGATTCCCTTCTATGTATTGAGCATTCTGGTATCTCTAGCTTGTGAGTC
TCCGATGTATCCTGACAATAGTAGTGGGCATTATTTTGCCACTTGGATTC
TTGAACCTTGAACCTTTGAATTTTCTGTTTTACATGATATTCAAATATTA
CCAAGGACTCTGAACACAGACCGCAGTCCTGAATCTATCTTGTGCTAGTG
TAGAAATATTTAAAACCACCTCCTGCTGTTTTACCCTCTGGACCTCCATT
TCCAAACCTGCGCCATGAATGAAATAATAATTCCGTTTAGGAATTAACAA
ACGAGCATAGTAAATAATCACTGGAGAGCAGTCGTCATTCTATTTATGAT
CACAAGGGTAGTTTATCTCAGAGCCGTGATCCCTGCTCTCTGTGCTCGTG
AAGTGCTGAACAGAAAACTTCCTTTTTATTTTTCATAATGCTATCTAGCT
GCTTTTCCATCACTTCTTTTTCCCGCTGACTGTGTATTGTACTTTTTCTC
TTCCCCCCCTTTTCTGCTTATTATTTCCCTTTTTCCGTCCCTCTCCCCGA
TACCTTCATTTTCTTTACTTTTTGATTCAGTTTCTTTACTCCCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_n12.b1 MSMg01no183_n12.b1 CHROMAT_FILE:
MSMg01no183_n12.b1 PHD_FILE: MSMg01no183_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:58 2005
         (418 letters)



>mm_chrX_154320845_154321662
          Length = 818

 Score =  530 bits (274), Expect = e-155
 Identities = 295/302 (97%)
 Strand = Plus / Minus

                                                                       
Query: 116 gtatttggatctatcctaggttgggctgtccagcctttggtctagacagtgtcaggcgtg 175
           ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 818 gtatttggatctatcctaggttgggctgtccagcctttggtctcgacagtatcaggcgtg 759

                                                                       
Query: 176 agctccctcttgtgggtggacctcaagttggaccattattggttggccactcccacaagt 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 agctccctcttgtgggtggacctcaagttggaccattattggttggccactcccacaagt 699

                                                                       
Query: 236 tctagaccaccattactccaacatgtcttgcagacaggaaaaactgtaggttgaaggttt 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tctagaccaccattactccaacatgtcttgcagacaggaaaaactgtaggttgaaggttt 639

                                                                       
Query: 296 ctgtggctgggttggtatcccaggaactgaggtttgaacatcagtgttctaactcttcat 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ctgtggctgggttggtatcccaggaactgaggtttgaacatcagtgttctaactcttcat 579

                                                                       
Query: 356 cagcattttaacaactccccccaacaaacctaactttagcagaaatttaacaattctagt 415
            ||||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tagcattttaacaactcttcaaaacaaacctaactttagcagaaatttaacaattctagt 519

             
Query: 416 ag 417
           ||
Sbjct: 518 ag 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no183_n12.g1 MSMg01no183_n12.g1 CHROMAT_FILE:
MSMg01no183_n12.g1 PHD_FILE: MSMg01no183_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:58 2005
         (282 letters)



>mm_chrX_154142397_154143078
          Length = 682

 Score =  528 bits (273), Expect = e-154
 Identities = 279/281 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaagtggcgggatgtatgccagtctctggaaacctgtcactgagcaagcccaaggagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaagtggcgggatgtatgccagtctctggaaacctgtcactgagcaagcccaaggagga 260

                                                                       
Query: 61  gctgatgcatttggaaggattcccttctatgtattgagcattctggtatctctagcttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgatgcatttggaaggattcccttctatgtattgagcattctggtatctctagcttgt 320

                                                                       
Query: 121 gagtctccgatgtatcctgacaatagtagtgggcattattttgccacttggattcttgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtctccgatgtatcctgacaatagtagtgggcattattttgccacttggattcttgaa 380

                                                                       
Query: 181 ccttgaacctttgaattttctgttttacatgatattcaaatattaccaaggactctgaac 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttgagcctttgaattttctgttttacatgatattcaaatattaccaaggactctgaac 440

                                                    
Query: 241 acagaccgcagtcctgaatctatcttgtgctagtgtagaaa 281
           ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 acagaccacagtcctgaatctatcttgtgctagtgtagaaa 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)