NNAAGCTATGGGCGCTATXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTTCCGATCGCAGCATTGAAGGAGATTTTCTCGACCCAGTTGAATCTCCA
GAAGCACTGATTTTACTGATTCCTGTGGATGACTTAGAAGATGATATGGA
AGAAATAATCGAGATATATGAAGAGGAGGAGGGAGAAGTGGGAGAGGAAG
AGCTGGTGGTGGAGGAGATACTGGTAGAGGAGGAAGAGGTATTGTTCTTT
CTCTCTTTTCTTTCTTTGTCTTTCCCTTCTCTTTTTCCGTCTTCTTTTCT
GTCTTTCCTTCTCCTTTCTTGTTTCTTTCTTTTTTTTTCTTTGTTTCCTT
TTTTCCTTTTTTGTTTTTCTTTCTCTTTTTTTCTTTCTGTTTCTCTTTTT
TTTTTTTTTTCTTTCTTTTCCTCTCTTTCTTTTTTTTTTTTCTTTGGTGG
GNGTTTTTTTTTTTTTCCCCCCCCCCCCCGNGGGGGNNNNNNNNNNAAAA
AAAAAAGAGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNN
NNNNTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCNTTNTNTTTN
NNTTTNTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTNTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTNT
TTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTNTTTTTTTTTNNTT
TTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTNTTTNNTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTN
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTT
TTTTTTTTNTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCATTTTTTTTTTATTTT
TATTTTTTTTTTTTTATTATTTATTTTTTTTATTTT

CGCTGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCTCTGTCCCCTCTACTTTTCCT
TCTCTTCATTTGGAGTAGATTTGCATAAAGGCCTTTTAAACTGCTGGCTC
CACTTGGGAATACTTTCTTCACAATCTCAGGCATGCATTTACAGCTCACT
GAGATTTCCCATTGGTAGCTTAATTCATGCCCCAGTAGTTTATTTAACAT
TTTTTTGTTCTTAAAACACAGTGTCATCTGTTTGAAACTATTGTTTTAGT
TGTTCACTGAGTTCTTGCCTGAATAATTTGACATACTCAGCAGCTCTGTT
TATTTTAAGGCCCCCCCCCCCCGTCTTTTCTTCTTTGGAGGCATAATGTG
TGTCAGAGGGGAATTAGAAAGGAATTACCATTGTTTAATGAATACTAAAG
TAAAAAAGGATTAAACATCTCTACAAATAGCCAGATCCCACAGGCTTCTT
GACTTTAAAAATTGTGGAAGTTAATTATATAGTGTAATTAAATTATTTTA
ATTCAATTTCAAACTTTCTTACATGAATAGAAAAATATTCCTTGTTATGA
GTAGGGATACATTTCTTTCAGTCAACCCCTCCTTTGGGATAAAAGAGAAT
TTGTCATTTGAATATGAACAATAAGGGAAAATTAA

Query= MSMg01no184_c17.b1 MSMg01no184_c17.b1 CHROMAT_FILE:
MSMg01no184_c17.b1 PHD_FILE: MSMg01no184_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:25 2005
         (200 letters)



>mm_chrX_59763787_59764386
          Length = 600

 Score =  348 bits (180), Expect = e-100
 Identities = 192/196 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttccgatcgcagcattgaaggagattttctcgacccagttgaatctccagaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 329 gaattccttccgatcgcagcattgaaggagattttctcgacccagttgaatctccggaag 270

                                                                       
Query: 65  cactgattttactgattcctgtggatgacttagaagatgatatggaagaaataatcgaga 124
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 269 cactgattttactgattcctgtggatgacttggaagatgatatggaagaaataatcgaaa 210

                                                                       
Query: 125 tatatgaagaggaggagggagaagtgggagaggaagagctggtggtggaggagatactgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tatatgaagaggaggagggagaagtgggagaggaagagctggtggtggaggagatactgg 150

                           
Query: 185 tagaggaggaagaggt 200
           | ||||||||||||||
Sbjct: 149 tggaggaggaagaggt 134


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 600
Length adjustment: 8
Effective length of query: 192
Effective length of database: 592
Effective search space:   113664
Effective search space used:   113664
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no184_c17.g1 MSMg01no184_c17.g1 CHROMAT_FILE:
MSMg01no184_c17.g1 PHD_FILE: MSMg01no184_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:25 2005
         (278 letters)



>mm_chrX_59691316_59691993
          Length = 678

 Score =  532 bits (275), Expect = e-155
 Identities = 275/275 (100%)
 Strand = Plus / Plus

                                                                       
Query: 2   tctctgtcccctctacttttccttctcttcatttggagtagatttgcataaaggcctttt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tctctgtcccctctacttttccttctcttcatttggagtagatttgcataaaggcctttt 261

                                                                       
Query: 62  aaactgctggctccacttgggaatactttcttcacaatctcaggcatgcatttacagctc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaactgctggctccacttgggaatactttcttcacaatctcaggcatgcatttacagctc 321

                                                                       
Query: 122 actgagatttcccattggtagcttaattcatgccccagtagtttatttaacatttttttg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 actgagatttcccattggtagcttaattcatgccccagtagtttatttaacatttttttg 381

                                                                       
Query: 182 ttcttaaaacacagtgtcatctgtttgaaactattgttttagttgttcactgagttcttg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttcttaaaacacagtgtcatctgtttgaaactattgttttagttgttcactgagttcttg 441

                                              
Query: 242 cctgaataatttgacatactcagcagctctgttta 276
           |||||||||||||||||||||||||||||||||||
Sbjct: 442 cctgaataatttgacatactcagcagctctgttta 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)