BAC Information

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BAC

Clone NameMSMg01-184P14
ChromosomeX (Build37)
Map Location 80,498,763 - 80,499,049
singlet/doubletsinglet
Overlap geneDmd
Upstream geneEG629310
Downstream geneTsga8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184P14.T7 (MSMg01no184_p14.b1)MSMg01-184P14.TJ (MSMg01no184_p14.g1)
ACCAG377101AG377102
length740767
length of high quality
(start - end)
308 (59 - 366)289 (72 - 360)
definitionCHROMAT_FILE: MSMg01no184_p14.b1 PHD_FILE: MSMg01no184_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:34 2005CHROMAT_FILE: MSMg01no184_p14.g1 PHD_FILE: MSMg01no184_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGGNNNGGATCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCCCATACACTGGGGCATTGATCCTTCACAGGAC
CAAGAGCCTTTCCTCTCATTGATGCCCCACAAGGCTATCCTCTGGTTCAT
ATGCGGCTGGAGCCATGAGTCCCTCCATGTGTACTTTTTGGTCAGTGGTT
TAGTCCCTGGAAGCTCAGGCAGTACTGGTTGGTTCATATTGTTGTTCCTA
CTGTGGGGCCACAAACCGCTTGAGCTCCTTGGGTCCTTTCTCTAGCTCTT
TCACTGGGCACCCTGTGCTCATTCCAATGGATGGCTGTGAGTATCCACCT
TTGTATTTGTCATGAATTGGCTGNATCTCCTGACATTCCCTGCATATAAT
TAATTCTGCCCACCTACACAGCCTTTAACGCCAAAAAGAAAAATATATCC
AGTGATAAAATGATCAGTTTATTTCTTTATCAATCTTCAGACATTATACT
TAACCATGCAAGAGGTTATTTGAACACTAGTGATTGTTTAATCTGATAAA
CCTGTTTCTAGAGTAATTCCATAGCTATAATACAATGTCCTGTTATCTGA
CTCAAGGATGCTGCCAGAAGCCATGTTGTCAATGTCATCTGTGCAGATAT
TTGTTTGTGATTGCAACAAATGGAACCATTCACTCATTCATTGTGGTCCA
TAGTGTCTACTTCCACTGTATTTTACAGCTTATACATGGC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTTTTTTTTAAAGATTTATTTATTATTT
ATATGTATGTACACTGTAGCTGTCCCCACATACACCACTAGAGGGCGTCA
GGTGTCATTACAGATGGTTGTAAGCCACCATGTGGATGCTGGGATTTGAA
ATCATTACCTTCAGAAGAACAGTCAGTGTTCTTAATCGCTGAGCCATCTC
TCCAACCCCCTGGAATTCTTTTTTAATGGAAGGAGCCAGGGTTCATTTTT
TTACTAGCCCTTTGTCTACCAATCATCATCTTGGGGAGCATGCTGCCTAA
AGGTTGATGTTTTGTTTCTACCCACCACCCTTCTGGTTTTCAATGAATGA
CCCAATGGCCACCCCCATTAAATGAAGAAACCATGTTTCCTGTTCCATTT
TCTTCCTTCTCTTTTTCTCCCTATTTCTTTAAAGATGAATCAGTATCTAG
TTTATTCTTGAATACTAACGACATGGTATATTCATAATTATATAAAACAT
GATTCCAAGTTGGTTGTACCAATTTAAGTTCTCACTAATTTAATAAATAA
TATGTTTACCTCAAAGTTTCTCCATCACTTAGAAATAGACTGAAATTCAA
TATAAATTTCTCCTGATTTATGACCTTTACTTAATTTTTCCACATCTAAA
AAAATTGAAATATTTTTACATAATTTACCTTTTAAATTTTATTTTTCATA
TTTATACTATATTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_p14.g1 MSMg01no184_p14.g1 CHROMAT_FILE:
MSMg01no184_p14.g1 PHD_FILE: MSMg01no184_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:34 2005
         (289 letters)



>mm_chrX_80498561_80499249
          Length = 689

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%), Gaps = 2/288 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   ttttttttaaagatttatttattatttatatgtatgtacactgtagctgtccccacatac 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ttttttttaaagatttatttattatttatatgtatgtacactgtagctgtccccacatac 262

                                                                       
Query: 63  accactagagggcgtcaggtgtcattacagatggttgtaagccaccatgtggatgctggg 122
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 accagtagagggcgtcaggtgtcattacagatggttgtaagccaccatgtggatgctggg 322

                                                                       
Query: 123 atttgaaatcattaccttcagaagaacagtcagtgttcttaatcgctgagccatctctcc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atttgaaatcattaccttcagaagaacagtcagtgttcttaatcgctgagccatctctcc 382

                                                                       
Query: 183 aaccccctggaattcttttttaatggaaggagccagggttcattttttt-actagccctt 241
           ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 383 aacaccctggaattcttttttaatggaaggagccagggttcattttttttactagccctt 442

                                                           
Query: 242 tgtctaccaatcatcatcttggggagcatgctgcctaaaggttgatgt 289
           |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 443 tgtctaccaatcatcatcttggggagca-gctgcctaaaggttgatgt 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)