CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGTAATCCTTTGTATGAGACAAGGTTCCCTGGTCCTGCTACAAAT
CTTGACTCACTAAAACTTCAATTCTTGGGACTAGGAGTGGTAATAACACA
TGTGTTTAAACCTAAGCACTCCAGAGCCAGAATCCTCTATGATTTTGAGG
CTAGCCTGGTTTACACAGTGTGTCCCAGGTTACTCTAAGCTACATAATGA
GATCCTGGACAAAACCAAAACCAAAATTGAACTAGTACTTAAGTTTTTGG
GGAAAACTGACCTACCTAATGGAAGGGTGATTTAAACTTCTGCTGGAAGC
CCCACAGGCCTGGGCCAATCATTCTTTAATGCAGTCACTTAGGAAATTCA
ATGGTGTGGATTCCCAAACCACTTTGAACAAAACATCTATTCCTTGTCTA
GTTTCTCTAATCTCTGACAGGACCGAAAAAAATGTCAATGCAGGTATCAG
GTACCATGCCCTTTGTGGGCTATACTGGATATGTTGGGTACACAGCCTCG
ATTATACTTTTTCTCACCTAATCAGGATTGTGTGTGTTGGGGACTAACTG
TACAATTTTCTTCCTGGTCCACCTTACCAGAAGGGACCATTTTTAATACT
ATAGGTACATCTCATGTGGTGGCGGCACCTCGACTTTTTTCCCCACCCTT
TCGACTTACAATTTCCCTTTAATTTTGCCACCCACCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAAGAAAGAACTTATGGCATA
GCATTGAGGCAATGACACAAGGAAATAATTAGATATTAGAAAGTGCCCCT
GTGTTTCTGAATGATGCAAGCCTTTATTGCTGTGTAGCCAAAGGGAAACC
GAAATCCTTCAGAAAAATCAAAGAGAGGAGCCAAATAAACACCTTTCATC
CAGCAAGATCAAAAACTGCTCTTAGAAAACTGGCAAGGTATGCAACAGGC
AAACGAAGTTTCTGTGTCAGTAAAGAAGGATCTTCACTTATAGCCTCAAT
TTTACACTTTCTTAGTGTATCAATTTCTACAAAACATGACCTCTCAAAGA
ATCAGTTTAACTAAGGGTTTAATAAATCATTCTGTGCAACTATATACCGG
CTGCATCATTGGACTGAAAGTGAATGGTCCATGTGTTGCCACTGATGTGA
GCCATTTGCCTGTTGTCCTTCAGGAGAATTATATGACCTTCAACAAGCAA
TCCAAATATGAAAAAGTAATAGGAACCCAACTCACTAACTGTGACAGACA
AAGCAATTGTTTAAGGCCACAAGTGCTATTTTCAGGAGTCCAACTTTGTC
TGTGTTCTGAATCTAGTCAAACACAGATATAAGTATTTTGAATAAAACTT
TCCTTTGCACTATAAAGAGATTACTACAGTTTTGTCCC

Query= MSMg01no186_o23.b1 MSMg01no186_o23.b1 CHROMAT_FILE:
MSMg01no186_o23.b1 PHD_FILE: MSMg01no186_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:05 2005
         (546 letters)



>mm_chrX_53074503_53075444
          Length = 942

 Score =  360 bits (186), Expect = e-103
 Identities = 456/556 (82%), Gaps = 36/556 (6%)
 Strand = Plus / Plus

                                                                       
Query: 7   attcctgtaatcctttgtatgagacaaggttccctggtcctgctacaaa--tcttgactc 64
           ||||||| |||||||| ||||||| ||| | |||  ||| |||||||||  | |||||||
Sbjct: 207 attcctgcaatcctttttatgagaaaagatgccccagtcttgctacaaaggt-ttgactc 265

                                                                       
Query: 65  actaaaacttcaattcttgggactaggagtggtaataacacatgtgtttaaacctaagca 124
            | |||||||||||| ||||| || || ||| || ||||||| |  ||||||||| || |
Sbjct: 266 ccaaaaacttcaattattggggctgggtgtgatagtaacacaagcctttaaacct-agta 324

                                                                       
Query: 125 ctccagagccagaatcctctatgattttgaggctagcctggtt--tacacagtgtgtccc 182
           | |||||| ||||  ||| | ||| ||||||||||||||  ||  |||| ||||||| ||
Sbjct: 325 ccccagagtcagaggcctttgtgagtttgaggctagcct--tttctacatagtgtgttcc 382

                                                                       
Query: 183 aggttactctaagctacataatgagatcctgga--caaaaccaaaaccaaaattgaacta 240
           || ||||||| ||||||||||  ||| |||  |  ||||||||||||||||| |||| ||
Sbjct: 383 agattactctgagctacataaaaagaccct--atccaaaaccaaaaccaaaactgaagta 440

                                                                       
Query: 241 gtactt-aagtttttggggaaaactgacctacctaatggaagggtgatttaaacttctgc 299
            ||||| || || |||||||||||||||||||||| | |||| |||||||||| | || |
Sbjct: 441 atacttcaa-ttgttggggaaaactgacctacctagtagaagtgtgatttaaaatccttc 499

                                                                       
Query: 300 tggaagccccacaggcctgggccaatc-attctttaatgcagtcacttaggaaattcaat 358
           ||||||||||||| | ||||||||| | ||||| ||||||||||||||||   || ||||
Sbjct: 500 tggaagccccacatgtctgggccaa-caattctataatgcagtcacttag---atccaat 555

                                                                       
Query: 359 ggtgtggattcccaaaccactttgaacaaaacatctattccttgtctagtttctctaat- 417
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 556 ggtgtggatccccaaaccactttgaacaaaacatctattccttgtctagtttctctaatg 615

                                                                       
Query: 418 ctctgacaggacc--gaaaaaaatgtcaatgcaggtatcaggtaccatgcc--ctttgtg 473
           | ||||| ||  |  |||| || || |||||||| ||||| ||||||||||  || |   
Sbjct: 616 c-ctgactgg--cttgaaacaa-tgccaatgcagatatcaagtaccatgccgcctata-- 669

                                                                       
Query: 474 ggctatactggatatgttgggtacacagcctcgattatactt---tttctcacctaatca 530
           | ||||||||||||||| ||| ||||||| |  |||||||||   ||   || || ||||
Sbjct: 670 gactatactggatatgtgggggacacagcttatattatacttccgtt---caactcatca 726

                           
Query: 531 ggattgtgtgtgttgg 546
           ||||||||||||||||
Sbjct: 727 ggattgtgtgtgttgg 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 942
Length adjustment: 10
Effective length of query: 536
Effective length of database: 932
Effective search space:   499552
Effective search space used:   499552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)