BAC Information

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BAC

Clone NameMSMg01-187F05
ChromosomeX (Build37)
Map Location 93,207,583 - 93,207,876
singlet/doubletsinglet
Overlap genenone
Upstream gene9630042H07Rik, Arhgef9, LOC619688, LOC100042189, 2810002O09Rik, Asb12, LOC668202, AK129302, A130028J20Rik, 1700010D01Rik, Las1l
Downstream geneMsn, Psmb7-ps1, LOC668221, Vsig4, B230358A15Rik, Heph, Gpr165, LOC675824, LOC668234, EG668236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187F05.T7 (MSMg01no187_f05.b1)MSMg01-187F05.TJ (MSMg01no187_f05.g1)
ACCAG378712AG378713
length736731
length of high quality
(start - end)
319 (46 - 364)294 (76 - 369)
definitionCHROMAT_FILE: MSMg01no187_f05.b1 PHD_FILE: MSMg01no187_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:36 2005CHROMAT_FILE: MSMg01no187_f05.g1 PHD_FILE: MSMg01no187_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATTTTTTCTTCAGCCCCCAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATCCCCCCCACCCAGAAGCTGGAAAGAACCTAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATG
GAGTACTACTCAGTTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAA
ACGTATGGACCTGTAGGGCTTCTTCCTGAGCGAGGTAACACATTCACAAA
TAAACTCACTCAATATGCCTTCACTGATTACTGGATATTAGCTTTTAACC
TAGGATACTTTAGATATCAGATTATTATTTTGTTTTACACTTGACCCTTC
CCGATTTAAGTTTTACTGATTTGTGCACTCTTATTT
ACAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAGTGATGAGGCAGAGAAGGGAGG
ACTGGAGCAGCAAAAGCAGCAAACTAGGGAGCATCCAAACACAATTCATA
TCAAGGTCTCAGTGCTTCCCTACCCACAACAGGCCTCTTGTATTTGTCCC
TGAGTACAAAATAAAATAAGACATAGGCAATCACTACCAGCCCAGAAACT
CCAGGCCAGCTCCAGGCAGCCCAGGCTGCCTCAGTTGTGTGTATTACATG
AACACTGACAACAAAGGAAACAGCAGCTGGCTTCGCAGGAGGGCCTGAAG
GTGGTAGGCATATTCTGGGTCCTGACAGAGCGTTGTTCCCTCAGGAGTTG
GTGGCTACTTCTGCTTGCACCCACTCCAAGTTCCAGGAAGAGGATGTTCA
TGGAAGAATGGAGAGGAACTGGAGCCACCCAGGAGTTTTTCGTTCCTGCT
ATGGCCAGAGGGAGGAGTGTCAGACCTTGAACTATGTGCCCCTGCTTGCT
TATTGAGAGAGTCTATCTAGGTCTTAGTCTCTAAGGTAATCAGTCAAGTG
ACTTTGGCCATTCTTTCTCCTCTTCCTTTCTCCCCATCTCATTTCCAGCC
CATACCATTGTGAATAGAAACAGGCTCAAAGTTAAAATGTAAAAGGTACC
TTATAAATATTTCTTTCCCCCTTCAGCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_f05.g1 MSMg01no187_f05.g1 CHROMAT_FILE:
MSMg01no187_f05.g1 PHD_FILE: MSMg01no187_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:36 2005
         (294 letters)



>mm_chrX_93207383_93208076
          Length = 694

 Score =  561 bits (290), Expect = e-164
 Identities = 293/294 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagtgatgaggcagagaagggaggactggagcagcaaaagcagcaaactagggagcatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agagtgatgaggcagagaagggaggactggagcagcaaaagcagcaaactagggagcatc 435

                                                                       
Query: 61  caaacacaattcatatcaaggtctcagtgcttccctacccacaacaggcctcttgtattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 caaacacaattcatatcaaggtctcagtgcttccctacccacaacaggcctcttgtattt 375

                                                                       
Query: 121 gtccctgagtacaaaataaaataagacataggcaatcactaccagcccagaaactccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gtccctgagtacaaaataaaataagacataggcaatcactaccagcccagaaactccagg 315

                                                                       
Query: 181 ccagctccaggcagcccaggctgcctcagttgtgtgtattacatgaacactgacaacaaa 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ccagccccaggcagcccaggctgcctcagttgtgtgtattacatgaacactgacaacaaa 255

                                                                 
Query: 241 ggaaacagcagctggcttcgcaggagggcctgaaggtggtaggcatattctggg 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ggaaacagcagctggcttcgcaggagggcctgaaggtggtaggcatattctggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)