BAC Information

Click to search

BAC

Clone NameMSMg01-187G13
ChromosomeX (Build37)
Map Location 67,889,679 - 67,890,083
singlet/doubletsinglet
Overlap genenone
Upstream geneAff2, 1700020N15Rik, Ids, 1110012L19Rik, 4930567H17Rik, LOC100040304, LOC628002, LOC628012, BC023829, EG547447, LOC666981, LOC100040409, LOC628053, LOC100040432
Downstream geneEG280121, LOC666993, Ppia-psx_466.1, EG628080, G630014P10Rik, LOC667013, Mtm1, Mtmr1, Cd99l2, LOC667017, Hmgb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187G13.T7 (MSMg01no187_g13.b1)MSMg01-187G13.TJ (MSMg01no187_g13.g1)
ACCAG378768AG378769
length744745
length of high quality
(start - end)
313 (46 - 358)666 (77 - 742)
definitionCHROMAT_FILE: MSMg01no187_g13.b1 PHD_FILE: MSMg01no187_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:43 2005CHROMAT_FILE: MSMg01no187_g13.g1 PHD_FILE: MSMg01no187_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTAGCTCTGTACCCCATTTTTTAATAGGGTTATTTGATTT
TCTGGAGTTCATCTTCTTGAGATATATATTGGATATTAGTCACCTATCTG
ATTTAGGATTGGTAAAGATCCTTTCCCAATTGGTTGGTGGCCTTTTTAAA
AGAACACACATGGTATGCACTCACTGATAAACAGATATCAGCCCAGAAAC
TTAGAATATCCAAGGTACAATTTGCAAAACACACGAAACTCAAGAAGAAG
GAAGTCCAAAGTGTGGATACTTCGTTCCTTCTTAGAATGGGGAACAAAAT
ACCCATGGAATGAGTTACAGAGACCAAGTTCAGAGCTAAGATGGAAGGAA
AGACCATCCAGAGTCTGCCCTACCCGGGGATATACAAACACCAAACCCAG
ACTCTATTGCATATGCCAGAAAGATTTTGCTTACAGGACCCTGACATAAT
TCTCTCTTGTGAGTCTATGCCAATGCCTGGCAAATACAGAAGTGGATGCT
CACAGTCATCTATTGGATGGAACACAGGGCCCCTAATGAAGGGACTAGAG
AAAGTACCCAAGGAGCTAAAGGGGTCTGCAACCCTATAGGAGGAACAACA
ATATGAACTAACCAGTATCCCCCAGACCTGTGTCTCTAGTTGCATATATA
GCAGAGAATGGCCTAGGTAGCCATCAATGGAAGGAGAGGCCCTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAACCTGGAGACAGGAACAGATAC
AGAGGCAATGTACAGTTTACTTTCTTATTCAGCTTGCTTTATTAGAGCAC
CCAGGACAACCAACACAGTGGTGACACCACCCACAATGGGCTGGTTCCTC
CCTTGTCAATCTCTAATTAAGAAAATGCCTTATAGGCTTACCTATAGCTA
GATGCTATGGAGGCATTTCTTTCTTTAAAAAAAATTATTAGGTATTTTCC
TCATTTACATTTCCAATGCTATCCCAAATGTCCCCCATACCGTCCAAGGC
AATTTCTTAATTGAAGTTTTTTTTTCCTCTCAGGTGACTATAGATTTTGT
TGAAGTGGCATAAAACAGGCCAGCACAAGTGCAGTGAATCCTCCTGATTC
TCTCTCTGACTACCATTCTTCTCCCTTGTTCTTGATTAAATATCAGTGGT
CATTAGAATTCACGATTTGGCTCTAGTAGTAGAGATTCTATTTCAATGTG
CAGCCTCAGGTACTCTGTACTTTAATATGCACCACACAAATGATTATTGC
TGTGGGCTCCAGGAGAGGCTAGATTTCTCTTGCTTAAATTGTAGTACAAT
ATTGACTTGGTAGTTACTGTAAAAAAATGTCATTGTCAGTTAAATGGTTC
TTAAATCACAATCATAGAGCTGTAGGGTGCCATAGTGGGATGGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_g13.g1 MSMg01no187_g13.g1 CHROMAT_FILE:
MSMg01no187_g13.g1 PHD_FILE: MSMg01no187_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:43 2005
         (666 letters)



>mm_chrX_67889217_67890283
          Length = 1067

 Score =  733 bits (379), Expect = 0.0
 Identities = 397/405 (98%), Gaps = 5/405 (1%)
 Strand = Plus / Plus

                                                                       
Query: 267 tccaaggcaatttcttaattgaag----tttttttttcctctcaggtgactatagatttt 322
           ||||||||||||||||||||||||    ||||||||||||||||| ||||||||||||||
Sbjct: 463 tccaaggcaatttcttaattgaagtttttttttttttcctctcagatgactatagatttt 522

                                                                       
Query: 323 gttgaagtggcataaaacaggccagcacaagtgcagtgaatcctcctgattctctctctg 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gttgaagtggcataaaacaggccagcacaagtgcagtgaatcctcctgattctctctctg 582

                                                                       
Query: 383 actaccattcttctcccttgttcttgattaaatatcagtggtcattagaattcacgattt 442
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 583 actaccattcttctcccttgttcttgattaaatatcagtggtcattagaattcatgattt 642

                                                                       
Query: 443 ggctctagtagtagagattctatttcaatgtgcagcctcaggtactctgtactttaatat 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ggctctagtagtagagattctatttcaatgtgcagcctcaggtactctgtactttaatat 702

                                                                       
Query: 503 gcaccacacaaatgattattgctgtgggctccaggagaggctagatttctcttgcttaaa 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gcaccacacaaatgattattgctgtgggctccaggagaggctagatttctcttgcttaaa 762

                                                                       
Query: 563 ttgtagtacaatattgacttggtagttactgtaaaaaaa-tgtcattgtcagttaaatgg 621
           ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 763 ttgtagtacgatattgacttggtagttactgtaaaaaaaatgtcattgtcagttaaatgg 822

                                                        
Query: 622 ttcttaaatcacaatcatagagctgtagggtgccatagtgggatg 666
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 ttcttaaatcacaatcatagagctgtagggtgccatagtgggatg 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1067
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1057
Effective search space:   693392
Effective search space used:   693392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)