Query= MSMg01no187_o09.b1 MSMg01no187_o09.b1 CHROMAT_FILE:
MSMg01no187_o09.b1 PHD_FILE: MSMg01no187_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:21 2005
(313 letters)
>mm_chrX_10738828_10739540
Length = 713
Score = 569 bits (294), Expect = e-166
Identities = 303/306 (99%)
Strand = Plus / Minus
Query: 5 gaattcacatatgcacacaattgcacacagaattctcaacatttcgtagaatgcgttccc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gaattcacatatgcacacaattgcacacagaattctcaacatttcgtagaatgcgttccc 451
Query: 65 aagtccattggggaacaccaaggtcccaaatcctgaatctcgcagaagaatgagacttat 124
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 450 aagtccattggggaacaccaaggtcccaaatcctgaatctcgcagaacaatgagacttat 391
Query: 125 gtctatgtttcactgccagagaggcaaatgctttcaaatttggcctgatttctctatgta 184
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 390 gtctatgtttcactgccagagaggcaaatgcttttaaatttggcctgatttctctatgta 331
Query: 185 gacttgcaggcatttttgcctctgggagtataagactctattgagaagacgctcaggtct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gacttgcaggcatttttgcctctgggagtataagactctattgagaagacgctcaggtct 271
Query: 245 gcttgctgtgtggtgccttcagattataagggaccctgcttgaggtcaaaaattgttgtg 304
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 270 gcttgctgtgtggtgccttcagattagaagggaccctgcttgaggtcaaaaattgttgtg 211
Query: 305 ccatgt 310
||||||
Sbjct: 210 ccatgt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no187_o09.g1 MSMg01no187_o09.g1 CHROMAT_FILE:
MSMg01no187_o09.g1 PHD_FILE: MSMg01no187_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:21 2005
(654 letters)
>mm_chrX_10590998_10592051
Length = 1054
Score = 1139 bits (589), Expect = 0.0
Identities = 633/657 (96%), Gaps = 16/657 (2%)
Strand = Plus / Plus
Query: 1 acataccccaaactatatttagaaaaacaaacaaacaaacaaacaaccaaaaaaaaacaa 60
||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 211 acataccccaaactatatttaaaaaaacaaacaaacaaacaaa-------------acaa 257
Query: 61 aaccagacaacctacgattccctgatttcaaaacttactacaacgctatagtattcaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aaccagacaacctacgattccctgatttcaaaacttactacaacgctatagtattcaaaa 317
Query: 121 gtgtggttatagcccggcgtggtggcacacacctttaatcccagcatttgggaggcagag 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gtgtggttatagccgggcgtggtggcacacacctttaatcccagcatttgggaggcagag 377
Query: 181 gcaggcagatttctgagtttgaggccagcctcatctacagagtgagttccaagacagcca 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 378 gcaggcagatttctgagtttgaggccagcctcgtctacagagtgagttccaagacagcca 437
Query: 241 gggttataaagagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaa---tgtgtggtgc 297
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 438 gggttataaagagaaaccctgtctcaaaaaaccaaaaaaaaaaaaaaaaatgtgtggtgc 497
Query: 298 tggcacaacacacacatgtagactggaaacaatagagatcctgcattctcaatatgctca 357
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 498 tggcacaacatacacatgtagactggaaacaatagagatcctgtattctcaatatgctca 557
Query: 358 aatgagttttgacagggtgtctaagccatttgatgaggatgatcttttcaacaaaacata 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aatgagttttgacagggtgtctaagccatttgatgaggatgatcttttcaacaaaacata 617
Query: 418 ctagaaaaactgaatacacatatttttaaaaccatggttcgttgcctaacattgtattaa 477
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 618 ctagaaaaactgaatacacatatttttaaaaccatggttctttgcctaacattgtattaa 677
Query: 478 aaataaactcaaaatgaacgaaaaacctaaatgtatataggacttaaaactataaaacac 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 678 aaataaactcaaaatgaacgaaaaacctaaatgtatataggacttaaaactataaaccac 737
Query: 538 ttggcaaaccatacaataccagatttaatgaaagcttaaaattgttttccgtatcaagat 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ttggcaaaccatacaataccagatttaatgaaagcttaaaattgttttccgtatcaagat 797
Query: 598 atattgagataccaaggcaacctaaataattggagacagaattttcaattcgcaggt 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 atattgagataccaaggcaacctaaataattggagacagaattttcaattcgcaggt 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
