BAC Information

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BAC

Clone NameMSMg01-188D13
ChromosomeX (Build37)
Map Location 125,360,885 - 125,361,210
singlet/doubletsinglet
Overlap geneLOC100040550
Upstream geneLOC385523, LOC100040516, Mdm4-ps, EG237030, LOC100040538
Downstream geneLOC100040562, LOC100040570, LOC669120, Diap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188D13.T7 (MSMg01no188_d13.b1)MSMg01-188D13.TJ (MSMg01no188_d13.g1)
ACCAG379309AG379310
length759717
length of high quality
(start - end)
330 (55 - 384)288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no188_d13.b1 PHD_FILE: MSMg01no188_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:48 2005CHROMAT_FILE: MSMg01no188_d13.g1 PHD_FILE: MSMg01no188_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAAACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCATCAACTCCAGACCAAAAACACTCAAGTATATTCC
ACCAATTCACTCAAAACACCACAGCATCAATAAGAAAAATTGCATGCACT
TTATGATAAAACTGTGTTCTTTTAGTAAACGGTAACTGGGCCTTGAAAAA
AAATTGGCATACAACAGCATAAATACCAACCAAAGCATGCTCAGATTTTA
TTTTATTTTTTGACTCAGTTTTGCTATATATTTCCAGTCACCAGTTTAGC
AAAGTTATTAACATTCAAAGTATTAATTTTGTGTTAAATGACTGGATACT
TATTTAAATAAGTAATTGCTTTTTTTTTTTTTTTCCCCCCCCCACACAGG
GTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACATTAGAACAACAAG
CTGGCCTCGAACTTAGAAATCTGCCTGCCTCTGCTTCCCAAGTGCTGGGA
TTAAAGACATGTGCCACCACCGCCCAGCTAAGTAATTGCATTTTTAAGTT
TGCTTCCAGCTTGAAGGTATGAACACAAAATTTTCAGTCCTCTACTTGGT
TTTACTCTTAGTGATCTATTCCTAATACCCCTTCCTCCCAAATAAAGATG
AGAAGAATGTCTCTTGTTCTTGTTTGCAAGATTAAATTAAATATTATATT
TTTAAAAAGACATGGCATGGTTTTTCATGTAAAAACACATATTATTTTAA
AGTGTACAN
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTT
TAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATAT
ATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTC
CCAATCTGTTGGTGGTCTTTTTGTTTTATTGACGGTGTCTTTTGCCTTGC
AGATACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTTGATCTTACA
GCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCTGTGCCCATATCT
TCAAGGCTTTTCTTTTTCTTTCCCCTCTATAAGTTTCAGTGTCTCTGGTT
TTATGTGAAGTTCCTTGATCCACTTAAATTTGACCTTAGTACAAGGAGAT
AAGTATGGATCGATTCGCATTCTTCTACATGAAAACAACCAGTTGTGCCA
GCACCAATTGTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTATCTC
CCTTGTCGAAGTTCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCT
TCAATTCTATTCCATTGGTCTACTGGTCTGTCTCTATACCAGTACCATGC
AGTTTTTATCACAATTGCTCTGTATATTAGCTTTATGTCAGGCTTGGAGA
TTCCATCAGAGGTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_d13.b1 MSMg01no188_d13.b1 CHROMAT_FILE:
MSMg01no188_d13.b1 PHD_FILE: MSMg01no188_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:48 2005
         (330 letters)



>mm_chrX_125360681_125361410
          Length = 730

 Score =  615 bits (318), Expect = e-180
 Identities = 324/326 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatcaactccagaccaaaaacactcaagtatattccaccaattcactcaaaaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatcaactccagaccaaaaacactcaagtatattccaccaattcactcaaaaca 264

                                                                       
Query: 65  ccacagcatcaataagaaaaattgcatgcactttatgataaaactgtgttcttttagtaa 124
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcacagcatcaataagaaaaattgcatgcactttatgataaaactgtgttcttttagtaa 324

                                                                       
Query: 125 acggtaactgggccttgaaaaaaaattggcatacaacagcataaataccaaccaaagcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acggtaactgggccttgaaaaaaaattggcatacaacagcataaataccaaccaaagcat 384

                                                                       
Query: 185 gctcagattttattttattttttgactcagttttgctatatatttccagtcaccagttta 244
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctcagattttatttaattttttgactcagttttgctatatatttccagtcaccagttta 444

                                                                       
Query: 245 gcaaagttattaacattcaaagtattaattttgtgttaaatgactggatacttatttaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcaaagttattaacattcaaagtattaattttgtgttaaatgactggatacttatttaaa 504

                                     
Query: 305 taagtaattgcttttttttttttttt 330
           ||||||||||||||||||||||||||
Sbjct: 505 taagtaattgcttttttttttttttt 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)