Query= MSMg01no189_h07.b1 MSMg01no189_h07.b1 CHROMAT_FILE:
MSMg01no189_h07.b1 PHD_FILE: MSMg01no189_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:26 2005
(313 letters)
>mm_chrX_41438617_41439329
Length = 713
Score = 582 bits (301), Expect = e-171
Identities = 307/309 (99%)
Strand = Plus / Plus
Query: 5 gaattccattctgtattaaatacacctagaaaaactaaattaatgagcagttatctgtac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccattctgtattaaatacacctagaaaaactaaattaatgagcagttatctgtac 264
Query: 65 tactatgcagagtttgtaatatagtttgacatataatgtagaaatgttacaaaaattgct 124
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tattatgcagagtttgtaatatagtttgacatataatgtagaaatgttacaaaaattgct 324
Query: 125 tggaacaaaacctatgggacatagtagataatttggagatagtaaaatgattattttaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggaacaaaacctatgggacatagtagataatttggagatagtaaaatgattattttaaa 384
Query: 185 tcaagaactttaaccagagaacaaatatgtatatgctgatgaattatttcatactgaata 244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 tcaagaactttaaccagagaacaaatatgtatatgctgatgaatgatttcatactgaata 444
Query: 245 tagccaatcaattttacttggagtcaatgaacacttcaaagtttaatcttctagaaagta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagccaatcaattttacttggagtcaatgaacacttcaaagtttaatcttctagaaagta 504
Query: 305 gcttagact 313
|||||||||
Sbjct: 505 gcttagact 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no189_h07.g1 MSMg01no189_h07.g1 CHROMAT_FILE:
MSMg01no189_h07.g1 PHD_FILE: MSMg01no189_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:26 2005
(481 letters)
>mm_chrX_41500910_41501790
Length = 881
Score = 835 bits (432), Expect = 0.0
Identities = 474/496 (95%), Gaps = 15/496 (3%)
Strand = Plus / Minus
Query: 1 aatgatttgaatcaaaatttagaaaagacaaaattatattcaccaactccccttaattaa 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 810 aatgatttgaatcaaaatttagaaaagacaaaattatattcaccaactggccttaattaa 751
Query: 61 taccagaggttcaatgtccacaacacacacttgaacattaaaattttgactgccaatgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 taccagaggttcaatgtccacaacacacacttgaacattaaaattttgactgccaatgtt 691
Query: 121 aaaaaatgtttgtgatcattaaataataaaatatgtatgaaagtgccatgcaaactggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 aaaaaatgtttgtgatcattaaataataaaatatgtatgaaagtgccatgcaaactggaa 631
Query: 181 tgaaactcaatgctaatataagaagta-ttttctgtagaatttttttatttttaaattta 239
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 630 tgaaactcaatgctaatataagaagtatttttctgtagattttttttatttttaaattta 571
Query: 240 tatatgtattcactttatatcctaatatcagccccctctcctctccctaatatcacattc 299
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 570 tatatgtattcactttatatcctaatatcagccccctctcctctccctaacaacacattc 511
Query: 300 taattctacctcttcttccacttttcccttatatgttgacaatggtgttaccctctgggt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 taattctacctcttcttccacttttcccttatatgttgacaatggtgttaccctctgggt 451
Query: 360 gtcaaccacaaacacatatgcccacacacatacacacacacacac---t----------- 405
|||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 450 gtcaaccacaaacacacatgcccacacacatacacacacacacacacatacacacacaca 391
Query: 406 caaacacgcaccatatgcccctaccccatgcacatcaagttgcttcaggactatttgcat 465
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 caaacacgcaccaaatgcccctaccccatgcacatcaagttgcttcaggactatttgcat 331
Query: 466 tgctccaactaaggct 481
||||||||||||||||
Sbjct: 330 tgctccaactaaggct 315
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
