BAC Information

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BAC

Clone NameMSMg01-190B06
ChromosomeX (Build37)
Map Location 64,103,529 - 64,103,726
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671840, Slitrk2, LOC666824
Downstream geneLOC627734, EG666828, Gm1140, LOC666842, LOC619873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190B06.T7 (MSMg01no190_b06.b1)MSMg01-190B06.TJ (MSMg01no190_b06.g1)
ACCAG380544AG380545
length830982
length of high quality
(start - end)
198 (106 - 303)86 (127 - 212)
definitionCHROMAT_FILE: MSMg01no190_b06.b1 PHD_FILE: MSMg01no190_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:12 2005CHROMAT_FILE: MSMg01no190_b06.g1 PHD_FILE: MSMg01no190_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCACCCCCCCCCATTTCATTTAAATAAAACAAACACCCTNTTNNNNTAA
AATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
NGATTCAAGAACACAAAGATTACTGAAGGCACAGAACGTTAGCTCTGTCA
GAAGACGTGCTTACCATGTGTAAAGCCATGCCTTCAATTTGCCAAACCAA
ACATAGGCTATGGATAAGTAGCATTCATCCTAAAGATACAGGATGCCTCA
ACATATAAAACGCCTGCATGTTATTCCGTATAAATATAAAACAGGAATTG
ATGCGTTGATGAACTAGAAGAATCATTTTTATTATGATGTTCATATAAAC
CAAAGGTATCTACAGATTCAGTGTCTATACTATCAAGCATCACTATACTT
CAAGATATAAAGTATTATTTTTTTTTCCCCCCCCCCACAGAAATAAGTGA
ATACCCTAAACACTAAATTATCCATCGAATTTACATACAACAAATTCAAT
TAGGAAAATTAACATATTACCGAGATATTATGTGATCTAAATATTATAGC
GATCTAGTAATCCAATGTAACATAGTGCTGGCCTCAATGCATACTTACAT
GACCCATAGAACACAATGAATATCGATAGAAAATCGGCACATATTATCTT
CAACTGACTTTTTACCAAAGCGTTATTGTTTATTACCCACTGATTATTGC
CTCCTTCCTTATTTCTTTACCACCACACAATTCAGAAACCTTTACTTCTT
TTACCCAGCTTAACAAAAATAATACCCCAAAATGTGAAAAACACCCCTTC
AATATTCACCCTAAATGAACCCCCGCCTAN
CAAACCGACCTTTAATTTTTTAACGACCCTCATTCTCCCCCCTCNNNCCG
GCTATTATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTTTTAGCCCCATTT
TTTAATGGGGCTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTAT
ATATATTGGATATTAGCCCCCTATCTGATTTAGGATAGGTAAAGATCCTT
TCCCAATCTGTTGGTGGCCTTTTTGTCTCACCTTGACCCTGTTAACATCT
CCCAATTTGAATACCAAACTGTTCAGCGTGTATTATGTTGCAAGTGAATG
TATCACGCCAACATACTGGAATCTATTATAATTATCTGATAACCATCTGC
ATTCCTCGTTGTTTCGTTTAAATTTTTTTTTATCTTTCCCCCCCCCCCCA
CCCACAAGAATAGATGTGACCACTCTGTCGTGACGTGCATACTTCTTCTT
TGTCGTACAAAAAAAACCTCTATCGCCACCGCGTGTTTTTTTCACACACA
TTGTTCGCCCCCAATCATATAATTTGTCTTGACGTGCAATCTCCTTTTCC
TTTTATTCAACCTATTTTTTTCTCCTCTCTTTTGTTTAATTACCCCCTTA
TTTACCCCATCTCTTTATTCTTTCTTTCCCTACCTCACACAAACTCCCGC
TTTTTTTAATCCCTTTTATATTACCTGCCTTATTCACTTTTTTTTCTTTT
CACCTCTCTCTTCCCTCCCCCTTTAACTTCGTTATCCTTCACGCTCTCCC
CGATAACGTTATTCAACCCGTAATTTTACCCGCTTTTCTTATTATATCAT
CTTTATTTCNTTCTCTCGCTTCTCTTCCTCACCTCTCTCCACATTCTATG
TTTATAATTCATCATCACTACATACCGCGTCTTATATTAATATANTATTG
AAACGAACATCGCTCTTGATCACACCATACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_b06.b1 MSMg01no190_b06.b1 CHROMAT_FILE:
MSMg01no190_b06.b1 PHD_FILE: MSMg01no190_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:12 2005
         (198 letters)



>mm_chrX_64103329_64103926
          Length = 598

 Score =  368 bits (190), Expect = e-106
 Identities = 196/198 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagaacacaaagattactgaaggcacagaacgttagctctgtcagaagacgtgcttacc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 caagaacacaaagattactgaaggcacagaacgttagctctgtcagaagatgtgcttacc 260

                                                                       
Query: 61  atgtgtaaagccatgccttcaatttgccaaaccaaacataggctatggataagtagcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtgtaaagccatgccttcaatttgccaaaccaaacataggctatggataagtagcatt 320

                                                                       
Query: 121 catcctaaagatacaggatgcctcaacatataaaacgcctgcatgttattccgtataaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 catcctaaagatacaggatgcctcaacatataaaacgcctgcatgttattctgtataaat 380

                             
Query: 181 ataaaacaggaattgatg 198
           ||||||||||||||||||
Sbjct: 381 ataaaacaggaattgatg 398


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space:   112100
Effective search space used:   112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)