BAC Information

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BAC

Clone NameMSMg01-190B12
ChromosomeX (Build37)
Map Location 165,348,433 - 165,411,142
singlet/doubletdoublet
Overlap geneArhgap6
Upstream geneFrmpd4, EG667822, EG637566, Msl31
Downstream geneAmelx, Hccs, LOC100040950, BC022960, Mid1, 4933400A11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190B12.T7 (MSMg01no190_b12.b1)MSMg01-190B12.TJ (MSMg01no190_b12.g1)
ACCAG380553AG380554
length724728
length of high quality
(start - end)
328 (45 - 372)216 (58 - 273)
definitionCHROMAT_FILE: MSMg01no190_b12.b1 PHD_FILE: MSMg01no190_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:14 2005CHROMAT_FILE: MSMg01no190_b12.g1 PHD_FILE: MSMg01no190_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,348,433 - 165,348,745)(165,410,927 - 165,411,142)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGTGATCAGTATTGTGATGGCCTCCTAAGTATCTCTTTCCTTGGC
TAGTCTATATCCTATGTAATGGATATGTAGTTCTTCCGATCATCTTTCCA
GTGAATAATTCTGATACTGCAGTTTCTTGCTCAGTATTTTCCAAGACCTT
GCCTTTACTGCCTGTTTAATGAGAGCCTGTGTATACCCATTAGATCCACC
AACCTAGTTTTCTCAGCTTTGCATGCTCATTGAATGAGCCAGAGAGACAT
ACACACTGCTACTACCCTGGTCTTACTTTAGGAGATGGGCATATTCAGTT
GGAATTGAGAGTTTTTTATTCTCGCCCCCCCCCGCCAACACCAATCCAGT
TCTTCCAGAGCAGATTCTTTTTTAAAAGAGAAGAAATTTCATTTTTTTAG
AAAAAATTTACGTGCATTGGTGCTTTGTCTGCATGTATGCATGGGTGAGG
GTATCAGATCTTGGAGTTATAGACAATGTGGGTGCCATATGGGTGCTGGT
AATTGAACCCAAGTCCTCTGGAATAGTAATGAAGAATAGCTTGTGGTTCA
GTATGTATGAACCAGGACTATATGCCGACGTACTGAAAACTGCCGAAACA
TTCGGACTGTCTTTTGCATATCACGGTGATAAATTTGTAGCCTAGGCCGC
CCTGAAACTCATAATGTGGCCCAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCAACCTAGCTCTATGGTTTTGACTTCTGATGACAGGAAAAATG
GATGTGCTGCTGAGGATAAAAGCCATCAGGGGCGTTTGACATAACAGCTT
TACTGTTGTTTTGACATGTTGCATTTGAGCTTCAAGAGGAGGCAGCTAAG
CAACTCAAGACATTGATGGTTTGTCCACAAAGAAGATATAGAAGGATGCA
TTTTGTGAAGATGTTTGCCAGTATAGAGTACAGTTGGAGCTATCTCTGAC
CTTTGAAGTGCACAAATTTTGAAACACTTCAGTTATTCCTGAATTTTTCT
CTTTTCTCGCCCCTCCCCAAGGAGTGTGCGAAGGCGGAAAGAAACCATAC
CAGGGTAACTTAATCACAAGTCTGATTTTATTGCGGATAATAACATCTAC
TCATAGTACTACAGCATCAAGGTTTCAGACTCAAATACCCCATCCATTTT
ATAAACATATAAATATGTTGACATTGTACCCGCCAAGATACCTTTTAACA
ATAGGTAAGCATATGCTGTATAGTTCACATCCACTCCGCTTATTCATTCC
TATCCTCCCCCATATTTCGACTCTTTCTGTATAATTGTACAACTCTGCTC
TAAGTCCTGCCCCCTAACAAAACTGGTTTTAACTATTTTACCCTTATGTT
TCCCACGCCACCCTCCCATCCCCTTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_b12.b1 MSMg01no190_b12.b1 CHROMAT_FILE:
MSMg01no190_b12.b1 PHD_FILE: MSMg01no190_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:14 2005
         (328 letters)



>mm_chrX_165348229_165348956
          Length = 728

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggtgatcagtattgtgatggcctcctaagtatctctttccttggctagtctat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggtgatcagtattgtgatggcctcctaagtatctctttccttggctagtctat 264

                                                                       
Query: 65  atcctatgtaatggatatgtagttcttccgatcatctttccagtgaataattctgatact 124
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 265 atcctatgtaatggatatgtagttcttttgatcatctttccagtgaataattctgatact 324

                                                                       
Query: 125 gcagtttcttgctcagtattttccaagaccttgcctttactgcctgtttaatgagagcct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcagtttcttgctcagtattttccaagaccttgcctttactgcctgtttaatgagagcct 384

                                                                       
Query: 185 gtgtatacccattagatccaccaacctagttttctcagctttgcatgctcattgaatgag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgtatacccattagatccaccaacctagttttctcagctttgcatgctcattgaatgag 444

                                                                       
Query: 245 ccagagagacatacacactgctactaccctggtcttactttaggagatgggcatattcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccagagagacatacacactgctactaccctggtcttactttaggagatgggcatattcag 504

                        
Query: 305 ttggaattgagag 317
           |||||||||||||
Sbjct: 505 ttggaattgagag 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no190_b12.g1 MSMg01no190_b12.g1 CHROMAT_FILE:
MSMg01no190_b12.g1 PHD_FILE: MSMg01no190_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:14 2005
         (216 letters)



>mm_chrX_165410727_165411342
          Length = 616

 Score =  418 bits (216), Expect = e-121
 Identities = 216/216 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacctagctctatggttttgacttctgatgacaggaaaaatggatgtgctgctgaggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 caacctagctctatggttttgacttctgatgacaggaaaaatggatgtgctgctgaggat 357

                                                                       
Query: 61  aaaagccatcaggggcgtttgacataacagctttactgttgttttgacatgttgcatttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aaaagccatcaggggcgtttgacataacagctttactgttgttttgacatgttgcatttg 297

                                                                       
Query: 121 agcttcaagaggaggcagctaagcaactcaagacattgatggtttgtccacaaagaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 agcttcaagaggaggcagctaagcaactcaagacattgatggtttgtccacaaagaagat 237

                                               
Query: 181 atagaaggatgcattttgtgaagatgtttgccagta 216
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 atagaaggatgcattttgtgaagatgtttgccagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space:   125649
Effective search space used:   125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)