MoG+ -Mouse Genome database with high added value-

BAC clone ordering.

BAC Information

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BAC

Clone Name	MSMg01-190B12
Chromosome	X (Build37)
Map Location	165,348,433 - 165,411,142
singlet/doublet	doublet
Overlap gene	Arhgap6
Upstream gene	Frmpd4, EG667822, EG637566, Msl31
Downstream gene	Amelx, Hccs, LOC100040950, BC022960, Mid1, 4933400A11Rik
Link	Open Mouse BAC browser

Click to get alignment info.

name	Frmpd4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:333605 MGI:3042378
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG667822 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667822 MGI:3646854
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	EG637566 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:637566 MGI:3645245
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	Msl31 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17692 MGI:1341851
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Arhgap6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11856 MGI:1196332
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Amelx (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11704 MGI:88005
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Hccs (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15159 MGI:106911
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040950 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040950
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	BC022960 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237246 MGI:2670977
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 13 ESTs, 2 Proteins

name	Mid1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17318 MGI:1100537
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	4933400A11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66747 MGI:1913997
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA pseudo : _no_value

name	Frmpd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131064 GeneID:333605 MGI:3042378
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FERM and PDZ domain containing 4 transcript_id : NM_001033330.2

name	EG637566 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94408488 GeneID:637566 MGI:3645245
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : predicted gene, EG637566 transcript_id : XM_913285.2

name	Msl31 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802420 GeneID:17692 MGI:1341851
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : male-specific lethal-3 homolog 1 (Drosophila) transcript_id : NM_010832.3

name	Arhgap6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130288 GeneID:11856 MGI:1196332
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Rho GTPase activating protein 6 transcript_id : NM_009707.3

name	Arhgap6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130616 GeneID:11856 MGI:1196332
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Rho GTPase activating protein 6 transcript_id : NM_178754.2

name	Amelx (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126517497 GeneID:11704 MGI:88005
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : amelogenin X chromosome transcript_id : NM_001081978.1

name	Amelx (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:127141014 GeneID:11704 MGI:88005
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : amelogenin X chromosome transcript_id : NM_009666.2

name	Hccs (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142346469 GeneID:15159 MGI:106911
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : holocytochrome c synthetase transcript_id : NM_008222.3

name	LOC100040950 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149272519 GeneID:100040950
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : similar to Ser/Arg-related nuclear matrix protein transcript_id : XM_001475551.1

name	BC022960 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149272521 GeneID:237246 MGI:2670977
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 13 ESTs, 2 Proteins product : cDNA sequence BC022960 transcript_id : XM_136142.6

name	Mid1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:127139932 GeneID:17318 MGI:1100537
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : midline 1 transcript_id : NM_010797.2

name	Mid1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:127138777 GeneID:17318 MGI:1100537
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : midline 1 transcript_id : NM_183151.1

name	EG637566 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94408489 GeneID:637566 MGI:3645245
definition	codon_start : 1 product : hypothetical protein protein_id : XP_918378.2

name	Msl31 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11545735 GeneID:17692 MGI:1341851
definition	GO_component : GO:0000785 - chromatin [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003682 - chromatin binding [Evidence IEA] GO_process : GO:0006333 - chromatin assembly or disassembly [Evidence IEA]; GO:0016568 - chromatin modification [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : male-specific lethal-3 homolog 1 protein_id : NP_034962.2

name	Arhgap6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:87252724 CCDS:CCDS30534.1 GeneID:11856 MGI:1196332
definition	GO_component : GO:0015629 - actin cytoskeleton [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005096 - GTPase activator activity [Evidence IEA]; GO:0005100 - Rho GTPase activator activity [Evidence IDA] GO_process : GO:0007015 - actin filament organization [Evidence IDA]; GO:0048041 - focal adhesion formation [Evidence IDA]; GO:0043087 - regulation of GTPase activity [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1 product : Rho GTPase activating protein 6 isoform a protein_id : NP_033837.2

name	Arhgap6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:87252731 GeneID:11856 MGI:1196332
definition	GO_component : GO:0015629 - actin cytoskeleton [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005096 - GTPase activator activity [Evidence IEA]; GO:0005100 - Rho GTPase activator activity [Evidence IDA] GO_process : GO:0007015 - actin filament organization [Evidence IDA]; GO:0048041 - focal adhesion formation [Evidence IDA]; GO:0043087 - regulation of GTPase activity [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : Rho GTPase activating protein 6 isoform b protein_id : NP_848869.1

name	Amelx (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126517498 GeneID:11704 MGI:88005
definition	GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0001503 - ossification [Evidence IEA] codon_start : 1 note : enamel matrix protein product : amelogenin X chromosome protein_id : NP_001075447.1

name	Amelx (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:32996703 GeneID:11704 MGI:88005
definition	GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0001503 - ossification [Evidence IEA] codon_start : 1 note : enamel matrix protein product : amelogenin X chromosome protein_id : NP_033796.1

name	Hccs (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542950 CCDS:CCDS30535.1 GeneID:15159 MGI:106911
definition	GO_component : GO:0005739 - mitochondrion [Evidence ISS] [Evidence IEA] GO_function : GO:0004408 - holocytochrome-c synthase activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016829 - lyase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : holocytochrome c synthetase protein_id : NP_032248.2

name	LOC100040950 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149272520 GeneID:100040950
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475601.1

name	BC022960 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149272522 GeneID:237246 MGI:2670977
definition	codon_start : 1 product : similar to BC022960 protein protein_id : XP_136142.5

name	Mid1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:127139933 GeneID:17318 MGI:1100537
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA]; GO:0015630 - microtubule cytoskeleton [Evidence IDA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007026 - negative regulation of microtubule depolymerization [Evidence IGI]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : midline 1 protein_id : NP_034927.2

name	Mid1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:127138778 GeneID:17318 MGI:1100537
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA]; GO:0015630 - microtubule cytoskeleton [Evidence IDA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007026 - negative regulation of microtubule depolymerization [Evidence IGI]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : midline 1 protein_id : NP_898974.1

name	EG667822 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667822
definition	number : 1 pseudo : _no_value

name	EG667822 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667822
definition	number : 2 pseudo : _no_value

name	4933400A11Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149272402 GeneID:66747 MGI:1913997
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4933400A11 gene pseudo : _no_value transcript_id : XR_035173.1

clone name	MSMg01-137O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124D21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-190B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323N10
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-143A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-051M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-197L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-210P03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-197L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-167C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-167C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-264A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-107D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-050A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-210N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-152F10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237P03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281H18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218C08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179A23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333I01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257N12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-061L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125O01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075A24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160P10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166C22
singlet/doublet	singlet
plural/unique	unique