BAC Information

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BAC

Clone NameMSMg01-191N06
ChromosomeX (Build37)
Map Location 43,268,374 - 43,268,676
singlet/doubletsinglet
Overlap genenone
Upstream gene1110059M19Rik, LOC100040038, EG385346
Downstream geneLOC100040075, Actrt1, EG245405, LOC665632
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191N06.T7 (MSMg01no191_n06.b1)MSMg01-191N06.TJ (MSMg01no191_n06.g1)
ACCAG381703AG381704
length752756
length of high quality
(start - end)
380 (46 - 425)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no191_n06.b1 PHD_FILE: MSMg01no191_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:35 2005CHROMAT_FILE: MSMg01no191_n06.g1 PHD_FILE: MSMg01no191_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGAAGTACTTAGGGAAATGGATGGAACTAGAAAATATCATCCTG
AGTGATATAACTCAAAAAACAAAACAAAACGAAACAATTGTATCTTGGGA
ATACCCAAGATATAATTCACAGACCACATGAAGCTCAAGAAGAAGGAAGG
TCACAGTGTAGATACTTTTGTACTTCTTAGAAGGAGAATCAAAATACCCA
TGAGAGAAGATAAAGAGACAAAGTTTGGAGCAGAAACTAAAGGAAATGTC
ATCTAGTGACTGTCCCACCTGGAAGTACCTTAAAATTACTCTTAAAATTA
CTACAACCTCTCTAGGCTGGGCCAGAATTTATGATCAGATTTTCAACTGT
CTTAGGTGGGGGTGGGGGGGATTNNNNNNNNNTNNNNNNNNNGNNGGGGG
GGNNNNNNNNNGNNGGNNGNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGNGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGNNGGGGGGGGGGTGTGG
GGGGGTGTTGTGTTGTGTGTTTGTGTGGTGTGTTTTTTTTTTTGTGCGGG
TGTGGTGTTTTGTTTGTGGTGTTTTNTTTTTTTGTTGTTTTTGTTTTGTT
GTCTTTTTTTTTTTTTTGGTTTTTTTGGTGGTGTTTTTGTTGTGTGGGTG
TTTTGTTGTTCCTGTTTCGTTGTTTGTTGTTGTGTTGTTGTGTTTTTGTG
TG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGT
TCAAAAATTCAGGTGACAGCAGACGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCCTTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGTGGTTCTTCAGAAAATTGGATATAGTACTACCGGAGGATC
CAGCAACACCTCTCCTGGGCATTTATCCCCAAGATGTCCCAACAGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGTCCTTCAGCAGAGGAATGGATACAGAATA
TGTGGTACATTTACACAATGGAATACTACTCAGCCTTTAAAAAGAATGAA
TTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACCCAATCACAAAGGAACTCACAGAATATGTGCTAACTGATAA
GTGGATATTAGCCCAGAAACTTAGGATACCCAAGATACAAGATAAAATTT
GCTAAAGGCATGAAACTCAAGAAAAACGAAGAACAAAGTGTGGACACTTT
GCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_n06.b1 MSMg01no191_n06.b1 CHROMAT_FILE:
MSMg01no191_n06.b1 PHD_FILE: MSMg01no191_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:35 2005
         (380 letters)



>mm_chrX_43267897_43268676
          Length = 780

 Score =  578 bits (299), Expect = e-169
 Identities = 302/303 (99%)
 Strand = Plus / Minus

                                                                       
Query: 76  aaaacaaaacgaaacaattgtatcttgggaatacccaagatataattcacagaccacatg 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 aaaacaaaacgaaacaattgtatcttgggaatacccaagatataattcacagaccacatg 721

                                                                       
Query: 136 aagctcaagaagaaggaaggtcacagtgtagatacttttgtacttcttagaaggagaatc 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 aagctcaagaagaaggaaggtcacagtgtagatacttttgtacttcttagaaggagaatc 661

                                                                       
Query: 196 aaaatacccatgagagaagataaagagacaaagtttggagcagaaactaaaggaaatgtc 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aaaatacccatgagagaagataaagagacaaagtttggagcagaaactaaaggaaatgtc 601

                                                                       
Query: 256 atctagtgactgtcccacctggaagtaccttaaaattactcttaaaattactacaacctc 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 atctagtgactgtcccacctggaagtaccttaaaattactcttaaaattactacaacctc 541

                                                                       
Query: 316 tctaggctgggccagaatttatgatcagattttcaactgtcttaggtgggggtggggggg 375
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tctaagctgggccagaatttatgatcagattttcaactgtcttaggtgggggtggggggg 481

              
Query: 376 att 378
           |||
Sbjct: 480 att 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)