Query= MSMg01no196_f02.b1 MSMg01no196_f02.b1 CHROMAT_FILE:
MSMg01no196_f02.b1 PHD_FILE: MSMg01no196_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:50 2005
(320 letters)
>mm_chrX_13339938_13340657
Length = 720
Score = 590 bits (305), Expect = e-173
Identities = 311/315 (98%), Gaps = 4/315 (1%)
Strand = Plus / Minus
Query: 5 gaattctttatgatagtctaaattagaaacatcccaagttccaaaaagaacacagaaaat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gaattctttatgatagtctaaattagaaacatcccaagttccaaaaagaacacagaaaat 314
Query: 65 tatagtgtccttatatagtgaaatagtaaaaagaaaatagatgtatatttgttacataca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tatagtgtccttatatagtgaaatagtaaaaagaaaatagatgtatatttgttacataca 254
Query: 125 aaatatagatgactctcacagcatagtacgtaaaagaaaccaggcatatgggctggggag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aaatatagatgactctcacagcatagtacgtaaaagaaaccaggcatatgggctggggag 194
Query: 185 atggctcagcagaaaaaagagccaagctgcacaagcctgatgacctgagctcaatcgcct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 atggctcagcagaaaaaagagccaagctgcacaagcctgatgacctgagctcaatcgcct 134
Query: 245 gaacccatataagaaagcaaatgtagcactctttttttttttttggtattttcctcgttt 304
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 133 gaacccatataagaaagcaaatgtagcactc----tttttttttggtattttcctcgttt 78
Query: 305 acattttcaatgcta 319
|||||||||||||||
Sbjct: 77 acattttcaatgcta 63
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_f02.g1 MSMg01no196_f02.g1 CHROMAT_FILE:
MSMg01no196_f02.g1 PHD_FILE: MSMg01no196_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:50 2005
(571 letters)
>mm_chrX_13165548_13166518
Length = 971
Score = 1096 bits (567), Expect = 0.0
Identities = 571/573 (99%), Gaps = 2/573 (0%)
Strand = Plus / Plus
Query: 1 ttataatataaaatttagaaaagtagacacaaaaccatggaacttatatttccctaatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ttataatataaaatttagaaaagtagacacaaaaccatggaacttatatttccctaatta 258
Query: 61 tagtaaaaaa--caagacagacagacatatagacacacacacagtggaaaaaataaatct 118
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tagtaaaaaaaacaagacagacagacatatagacacacacacagtggaaaaaataaatct 318
Query: 119 aaatacagcagaagtctaacagtagttatcattttcttacatagttcaccctgttttttg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aaatacagcagaagtctaacagtagttatcattttcttacatagttcaccctgttttttg 378
Query: 179 ctcatatgttccaaggtttctacaacagcaaaaacaaattgctgcataagctacttatat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctcatatgttccaaggtttctacaacagcaaaaacaaattgctgcataagctacttatat 438
Query: 239 ttgtagtgctatttagttacattaaattttggtgtttaagtcacaaatcatgtgtcattc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttgtagtgctatttagttacattaaattttggtgtttaagtcacaaatcatgtgtcattc 498
Query: 299 cacatgaaaactactgtgactattttaaaaatctgtctttattttgagacagttatagat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cacatgaaaactactgtgactattttaaaaatctgtctttattttgagacagttatagat 558
Query: 359 gtaatgtacttgtaaaaaatgacacaaagatttaagtttctctgaaaataccatctgaaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gtaatgtacttgtaaaaaatgacacaaagatttaagtttctctgaaaataccatctgaaa 618
Query: 419 aagaacttagtagatatcacagtcaggatggtgacatatgtaatatacaatatggtgaca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aagaacttagtagatatcacagtcaggatggtgacatatgtaatatacaatatggtgaca 678
Query: 479 tatgtaatgacatatacaataagctacaaaacatccatccctacaaggcattgtcatgat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tatgtaatgacatatacaataagctacaaaacatccatccctacaaggcattgtcatgat 738
Query: 539 gccttagacccattcatttgcctcccattctgc 571
|||||||||||||||||||||||||||||||||
Sbjct: 739 gccttagacccattcatttgcctcccattctgc 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
