BAC Information

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BAC

Clone NameMSMg01-197I06
ChromosomeX (Build37)
Map Location 100,089,040 - 100,089,271
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621083, Rgag4, LOC100042480, LOC331476, Pin4, LOC670921, Ercc6l, LOC668318, Rps4x, LOC100043080, Cited1, Hdac8, Phka1, LOC668331, LOC100042516, EG668339, Dmrtc1b, EG668343, LOC100043105, EG668349, EG382233, Dmrtc1c, EG668360, LOC668357, 1700031F05Rik, EG668369
Downstream geneDmrtc1a, 1700011M02Rik, 1700018G05Rik, EG331480, EG668382, LOC668387, EG245545, LOC100042610, EG621205, Nap1l2, LOC668217, 4930519F16Rik, LOC100042615, Cdx4, LOC671052, Chic1, Tsx, Tsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, Slc16a2, EG621381, EG668426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197I06.T7 (MSMg01no197_i06.b1)MSMg01-197I06.TJ (MSMg01no197_i06.g1)
ACCAG385211AG385212
length755720
length of high quality
(start - end)
686 (45 - 730)234 (128 - 361)
definitionCHROMAT_FILE: MSMg01no197_i06.b1 PHD_FILE: MSMg01no197_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:26 2005CHROMAT_FILE: MSMg01no197_i06.g1 PHD_FILE: MSMg01no197_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAG
ATGCTGGCGAGGATGTGGAGAAAGGGTAACAGTCCTCCATTGTTGTTGGG
ATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCCGA
AAATTGGACATAGTACTACCAGAGGATCCTGCAATACTTCTCCTGGGCAT
ATATCCAGAATATGTTCCAACCTGTAAGAAGAGCACATGCTCCATTATGT
TCATAGCATCCTTATTTACAACAGCCAGAAGCTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTANAAAAATGAATTTATGAAATTCCTAGGCAAATG
GATGGACCTGGAGGGTATCATCCTGAATGAAGTAACCCAATCACAAAGGC
ACTCCCACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTA
GGATACCCAAGATATAAGATACAACTTTCCAAACGCATGGAATTCAAGAA
GAACGAAGACCAAAGTGTGGACACTTTACCCTTTCTTAGAAATGGGAACA
AACAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGTTTGGGGCCCCAAAAGAAAAT
TGGGAAAATGATTAGTTCTCTCACCCGTTGATTAACTGAATTCTTGACAG
GGTCAGTTTGAAAGGCTGGATAAACTGAATTCATCTGGTATTAGCAACCT
TTCCTGAAATTGTTCTCAAAGCAAGTTTCTGAAAACACCATCAGTTGAGG
AAGGATCAGGTGTTCCAACATTCTTTAAGGTTGATCATTCCAGGGCTGAT
TCCTTGGCCTTCCATTCTGCATCATACAAACCTTACAAGTAATATATAGT
TCTTTAACATTTTTTGTATGCAACCCGCCGCCCCAGTACAGATCAGTTAA
GTATGATTTTTCTGCTTTCCCCCTGAATAAGTTAAAATACAATACCTTTC
TTCAGAAGTTAGTTTGATCATATAATCAAACTGCAATATAAATCTCCATT
TATGCCTTCTGAAAGGATGGCATATAATAATAAAAAGTCATGAGAATTTT
ATAGCCAACAAGATTTATTGGTTATGTGTAGCTAAAATTCTGGCTGGAGA
CATATTTATGTCCTAGTCAGTTTCATAGCCTGTCTCACTAGCGCGTTTAG
CACCATACTTTACTGCTTTGATTCGCTTCATTCGATTTTTCTTCCCACTT
CTCTGCAGCCCTACTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_i06.g1 MSMg01no197_i06.g1 CHROMAT_FILE:
MSMg01no197_i06.g1 PHD_FILE: MSMg01no197_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:26 2005
         (234 letters)



>mm_chrX_100088840_100089473
          Length = 634

 Score =  433 bits (224), Expect = e-126
 Identities = 230/232 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgattaactgaattcttgacagggtcagtttgaaaggctggataaactgaattcatctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgattaactgaattcttgacagggtcagtttgaaaggctggataaactgaattcatctg 260

                                                                       
Query: 61  gtattagcaacctttcctgaaattgttctcaaagcaagtttctgaaaacaccatcagttg 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggattagcaacctttcctgaaattgttctcaaagcaagtttctgaaaacaccatcagttg 320

                                                                       
Query: 121 aggaaggatcaggtgttccaacattctttaaggttgatcattccagggctgattccttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaaggatcaggtgttccaacattctttaaggttgatcattccagggctgattccttgg 380

                                                               
Query: 181 ccttccattctgcatcatacaaaccttacaagtaatatatagttctttaaca 232
           |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttccattctgcaacatacaaaccttacaagtaatatatagttctttaaca 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)