BAC Information

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BAC

Clone NameMSMg01-197M18
ChromosomeX (Build37)
Map Location 36,791,826 - 36,792,164
singlet/doubletsinglet
Overlap genenone
Upstream geneLamp2, LOC100040971, EG665352, LOC670495, Cul4b, Mcts1, C1galt1c1, EG665369, 6030498E09Rik, LOC547171, LOC670539, LOC100039700, 1700085A12Rik
Downstream geneLOC100039715, EG636756, EG636766, EG245391, LOC100039769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197M18.T7 (MSMg01no197_m18.b1)MSMg01-197M18.TJ (MSMg01no197_m18.g1)
ACCAG385378AG385379
length716727
length of high quality
(start - end)
317 (45 - 361)637 (76 - 712)
definitionCHROMAT_FILE: MSMg01no197_m18.b1 PHD_FILE: MSMg01no197_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:48 2005CHROMAT_FILE: MSMg01no197_m18.g1 PHD_FILE: MSMg01no197_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTGTCAGATTTACCCATGCTTTTTGCTTGAGAAACAAATTTCATC
ATCTGATTTACTGGCTACTCGTCAACTCATGCTTGCTTGGTTGACCATAA
TGGAGACCATAGATAAAGTGGTCATATATATATATATATTTTTTTTTTCC
TAGAGAGGGACATAGTGCATCACTGTATACCCCTTGGTTTGAAAGACATT
TTGTAAAAGCAGAATCTATTTTTAATTTATCAGATATAATAGATGAAAAA
TTACATTTTCATTTGCTAAATACAATCCTGTACATTCTAAGTTGGAAATT
AGATTTATGTTTTTTTTTGTCCACCCCGCCGCATACGTGCCTCCTTGTTC
TATAGAATAGATGCTGCACCAGGAAAAAAAAAAACAAGGCAGTGACTAGT
TCTCCATTTTCTTTTTTTTCCATTTTTATTAGGTATTTAGCTCATTTACA
TTTCCAATGCTATACCAAAAGTCCCCATACCCACCCCCCCCCACTCCCCT
ACCTATCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTATTGCGCCAT
ATAACGTTTGCAAGTCCAATGCCACTCTCTTTGTATTGACGTCCGACTAC
GTCATCTTTTTTTCACTATGCCGTTATTAACTTAAGCCCCGCCCTACCGC
TTTTTTTCAACACGCG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATACTTTAATAGCTGGACCTTGGC
AGTCAGCCTCAAGAGGAGGAACCGGCCAAGTAAGGAATAGACTTTTTTGG
TTAGCTTTAGGAATATAACTAATGGTTTTCATCAAAGAAGAGGGAGAAGG
GTAAGGCCATGTTTGTGATATTAGGGCTGGCTAGAATTCCTTCAACAAAA
ATTAACACATTGGACATAAGCAAACAGAAGGAAAAGAGCCCAAGAAAAGG
CACAAGAAGTTACAGACTAAGAGACACTCACACACACTCAGGAATATCAT
TAAAAATAAACTGAACTGGAAACTATAATATATATGCAAAGAATGTGTAG
AAAAATAGAATGGAAAACATAAATAAAATTAAATTTAAAAATTTTAAGTG
TAAAATTAAAAATTAAAAAAAATAATCCTTGGATTGACTTTGAAGAGACA
AACCTGCAAAAATGCCATTGAGTTCAATTTCTTTGGGCCAAATACTACTT
AACATACCTTTTTGGAGAACATTAAATTTTTATTTGAATGTGGTTATCAA
TTGGAAATTGCTTCTGGATTAGGCATGGGCACAGGAGTCTACTTCAGCTC
TAAGACTCCATCTGGTGCGGAGCCTTGCAGTCTCTGTGAATACTACATTA
GTCTCTGTGAGTTTGTATGAACATTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_m18.b1 MSMg01no197_m18.b1 CHROMAT_FILE:
MSMg01no197_m18.b1 PHD_FILE: MSMg01no197_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:48 2005
         (317 letters)



>mm_chrX_36791650_36792366
          Length = 717

 Score =  540 bits (279), Expect = e-158
 Identities = 311/339 (91%), Gaps = 27/339 (7%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagtgtcagatttacccatgctttttgcttgagaaacaaatttcatcatctgat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ggaattcagtgtcagatttacccatgctttttgcttgagaaacaaatttcatcatctgat 236

                                                                       
Query: 64  ttactggctactcgtcaactcatgcttgcttggttgaccataatggagaccatagataaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ttactggctactcgtcaactcatgcttgcttggttgaccataatggagaccatagataaa 296

                                                                       
Query: 124 gtggtcatatatatatatatat---------------------------tttttttttcc 156
           ||||||||||||||||||||||                           |||||||||||
Sbjct: 297 gtggtcatatatatatatatatatatatatatatatatatatatatatatttttttttcc 356

                                                                       
Query: 157 tagagagggacatagtgcatcactgtataccccttggtttgaaagacattttgtaaaagc 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tagagagggacatagtgcatcactgtataccccttggtttgaaagacattttgtaaaagc 416

                                                                       
Query: 217 agaatctatttttaatttatcagatataatagatgaaaaattacattttcatttgctaaa 276
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 agaatctctttttaatttatcagatataatagatgaaaaattacattttcatttgctaaa 476

                                                  
Query: 277 tacaatcctgtacattctaagttggaaattagatttatg 315
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tacaatcctgtacattctaagttggaaattagatttatg 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)