BAC Information

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BAC

Clone NameMSMg01-202F18
ChromosomeX (Build37)
Map Location 57,068,886 - 57,069,119
singlet/doubletsinglet
Overlap genenone
Upstream gene4930550L24Rik, Fgf13
Downstream geneF9, EG434782, Mcf2, Atp11c, LOC666517, LOC631784, LOC100039611, LOC100039621, Gm715, Hspa9-ps1, EG236831, LOC666559, LOC671636
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202F18.T7 (MSMg01no202_f18.b1)MSMg01-202F18.TJ (MSMg01no202_f18.g1)
ACCAG387546
length736741
length of high quality
(start - end)
---234 (128 - 361)
definitionCHROMAT_FILE: MSMg01no202_f18.b1 PHD_FILE: MSMg01no202_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:08 2005CHROMAT_FILE: MSMg01no202_f18.g1 PHD_FILE: MSMg01no202_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTAATTATGATTATTTTCCAAG
ACAATCAAAATCTACAATATCCCCGCGTTCAAGTGAGCTGAGGAATGGTG
GGTTCCTGCTGGCAGTGGACCCCGGCATTACCCATGGAATTTACCTGCAA
TATACAGGATTTATGAGGTATAGAGATTCCAATTAATATTCCAAACGAAA
ACCTGAGTGGCTACACAATATATTACAGGATCCAAGGCCATGTAAGTATT
TCCCAACTGGGTGATATATGGAACTGAGAGAAGTAAGCCAAAATATCCGT
GGAGATCCCAATAATGTCTGGCAACCTACAACGAACAATGCTTGCTAACT
GACTCTTTGCCAGCGATCACAGCTAGACATGGGGTATGGCTAGAATTGCT
GTAATCCTTTGCAAGTATAAACCCTGCGACTGGGTACTAGATGCTGTGTA
TGGAGACTTAGGATTTAATGCTTCCTTGCCTGGTATTAGTCTTGCTTTGC
ACTGACCTGCTATTATTTCCCTATTCCTTTCTGTGAAATGAGAATGTTTA
CTCTGTGCTCATATCACCATTATATCTTTCCATTTAATTGTGGCTCAACA
ATGTCATGAACCTTATATCTCCAAAAATAAATTGGACTTGAAGTTTTTAA
CACTGCTTGAGTTAAGACTATGGGTCTTCTTGCGCATGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_f18.g1 MSMg01no202_f18.g1 CHROMAT_FILE:
MSMg01no202_f18.g1 PHD_FILE: MSMg01no202_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:09 2005
         (234 letters)



>mm_chrX_57068686_57069319
          Length = 634

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcaagtgagctgaggaatggtgggttcctgctggcagtggaccccggcattacccatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcaagtgagctgaggaatggtgggttcctgctggcagtggaccccggcattacccatgg 260

                                                                       
Query: 61  aatttacctgcaatatacaggatttatgaggtatagagattccaattaatattccaaacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttacctgcaatatacaggatttatgaggtatagagattccaattaatattccaaacg 320

                                                                       
Query: 121 aaaacctgagtggctacacaatatattacaggatccaaggccatgtaagtatttcccaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaacctgagtggctacacaatatattacaggatccaaggccatgtaagtatttcccaac 380

                                                                 
Query: 181 tgggtgatatatggaactgagagaagtaagccaaaatatccgtggagatcccaa 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggtgatatatggaactgagagaagtaagccaaaatatccgtggagatcccaa 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)