Query= MSMg01no204_h04.b1 MSMg01no204_h04.b1 CHROMAT_FILE:
MSMg01no204_h04.b1 PHD_FILE: MSMg01no204_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:59 2005
(573 letters)
>mm_chrX_97421337_97422309
Length = 973
Score = 1007 bits (521), Expect = 0.0
Identities = 560/577 (97%), Gaps = 8/577 (1%)
Strand = Plus / Plus
Query: 5 gaattctatcatttgtggtgacttgcctgataagaaactaaaccaatggatatcctatcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gaattctatcatttgtggtgacttgcctgataagaaactaaaccaatggatatcctatcc 256
Query: 65 atgaagacctagagcggcaggcttagaaatcagtatatatggctataaataaaccagagg 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atgaagacctagagtggcaggcttagaaatcagtatatatggctataaataaaccagagg 316
Query: 125 gaaagatgggtttatactagaaaattgcagagaaaattagacagaaatgaatagaagttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gaaagatgggtttatactagaaaattgcagagaaaattagacagaaatgaatagaagttt 376
Query: 185 tgaaaatttattttgcattgagccagactcctttcaaagaggaaggtttctggtagcatc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 377 tgaaaatttattttgcattgagccagactcctttcaaagaggaaggtttctggtagcgtc 436
Query: 245 tagagccatggttctcaaccttcctaatgctgtgacccttaaatacagttcatattgtgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 437 tagagccatggttctcaaccttcctaatgctgtgacccttaaatacagttcatgttgtgg 496
Query: 305 tgactcctaaccataaaattattttcattgcacttcataactgtaatttggcgactgtta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tgactcctaaccataaaattattttcattgcacttcataactgtaatttggcgactgtta 556
Query: 365 tgaatacccacgtaaacagg-------tttttttttg-agatactggtttgccaaagggg 416
|||||| | ||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 557 tgaatattaatgtaaacagggtttttttttttttttggagatactggtttgccaaagggg 616
Query: 417 tcatggcccaccagttgagaagcactgatctaagagtctgttctcttcagcattacctct 476
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tcatgacccaccagttgagaagcactgatctaagagtctgttctcttcagcattacctct 676
Query: 477 gccccctactgtggcatgtttagtatacttggatggaggatcttcactcttcattcactg 536
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 677 gccccctactgtggcatgtttagtatacttggatgaaggatcttcactcttcattcactg 736
Query: 537 cttgaagcaccaatactatatgcagggaccctcttgg 573
|||||||||||||||||||||||||||||||||||||
Sbjct: 737 cttgaagcaccaatactatatgcagggaccctcttgg 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no204_h04.g1 MSMg01no204_h04.g1 CHROMAT_FILE:
MSMg01no204_h04.g1 PHD_FILE: MSMg01no204_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:59 2005
(543 letters)
>mm_chrX_97508828_97509770
Length = 943
Score = 1011 bits (523), Expect = 0.0
Identities = 538/543 (99%)
Strand = Plus / Minus
Query: 1 ttcagtacaggaacctgaaggtaggaactggagcagaggccatgaaagaatggcttgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 ttcagtacaggaacctgaaggtaggaactggagcagaggccatgaaagaatggcttgctc 878
Query: 61 aacaatcaggaacaccagcccaggcatggcactgcccacagtgaactgggccctcccaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 aacaatcaggaacaccagcccaggcatggcactgcccacagtgaactgggccctcccaca 818
Query: 121 tcagcaatagtaccccagagacttgcatacaggtcaaggttatggaaatattttcttagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 817 tcagcaatagtaccccagagacttgcatacaggtcaaggttatggaaatattttcctagc 758
Query: 181 tgagattctctcttttgaggagaaatgttatcaacatattatatgatactctaggaatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tgagattctctcttttgaggagaaatgttatcaacatattatatgatactctaggaatct 698
Query: 241 accacattactatatatgtgcttcaccctcacctcttgcctataaatctaccagcccctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 accacattactatatatgtgcttcaccctcacctcttgcctataaatctaccagcccctt 638
Query: 301 taccagagcttctctgtaaacttctctgaggcctggttcatggcccactcctttcaattg 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 637 taccagagcttctctgtaaacttctctgaggcctggttcatggtttactcctttcaattg 578
Query: 361 tatgtagaaggctcactaaataacaaacagtaaaatagtttgggaattgaaatccaatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tatgtagaaggctcactaaataacaaacagtaaaatagtttgggaattgaaatccaatct 518
Query: 421 gaggatatcaatagattacaaaactaatagaaatttagaactgtttttctgctatgtttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaggatatcaatagattacaaaactaatagaaatttagaactgtttttctgctatgtttt 458
Query: 481 aaatgagtttctgttttattagtgtctgtacatctatgcatgcattcctgtgttcatgtc 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aaatgagtttctgtttttttagtgtctgtacatctatgcatgcattcctgtgttcatgtc 398
Query: 541 tgt 543
|||
Sbjct: 397 tgt 395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
