Query= MSMg01no209_c17.b1 MSMg01no209_c17.b1 CHROMAT_FILE:
MSMg01no209_c17.b1 PHD_FILE: MSMg01no209_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:13 2005
(299 letters)
>mm_chrX_143706345_143707042
Length = 698
Score = 221 bits (114), Expect = 5e-62
Identities = 215/252 (85%), Gaps = 15/252 (5%)
Strand = Plus / Plus
Query: 55 ataaatgctctaggaagcttataacttaatcctct-ctaccgaattactcctt-tgaccc 112
||||||||||||||| ||||| ||||| |||| | || |||| ||||||||| || |||
Sbjct: 255 ataaatgctctaggaggcttacgacttactcct-tgcttccgacttactccttctg-ccc 312
Query: 113 aaggacacaccagaactttacagcttgccaaatggaacctgtaaggcagtctttctcaag 172
||||||||||||| ||||| |||| |||||||||||||| ||||||||||| |||||||
Sbjct: 313 aaggacacaccag-actttccagcctgccaaatggaaccagtaaggcagtccatctcaag 371
Query: 173 agggtggccagtg--cccttctctcttttaccctggcattttcagttctttttttgaccc 230
||||||||| || |||| |||||| ||||||||||||||||||||||||||| | |
Sbjct: 372 agggtggcc--tggaccctactctctcttaccctggcattttcagttctttttt--atct 427
Query: 231 acaggttgccc---tgtttttccccttctttgccccttatgagcaacatgagtttagaac 287
||| | ||||| || ||||| | |||| || |||||||||||||||||||||||||||
Sbjct: 428 acaagctgccctcatg-ttttctctttctgtgtcccttatgagcaacatgagtttagaac 486
Query: 288 ttttacttctca 299
|||| |||||||
Sbjct: 487 tttttcttctca 498
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 698
Length adjustment: 9
Effective length of query: 290
Effective length of database: 689
Effective search space: 199810
Effective search space used: 199810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no209_c17.g1 MSMg01no209_c17.g1 CHROMAT_FILE:
MSMg01no209_c17.g1 PHD_FILE: MSMg01no209_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:13 2005
(653 letters)
>mm_chrY_1655646_1656693
Length = 1048
Score = 549 bits (284), Expect = e-160
Identities = 555/658 (84%), Gaps = 41/658 (6%)
Strand = Plus / Plus
Query: 1 aaaacaaacaaaatctcttcaatctgtctcacca-------attaggtccaatg-ct--- 49
|||||||||||||| ||||||| ||||||| || ||||||||||||| ||
Sbjct: 186 aaaacaaacaaaatgtcttcaaagtgtctcagcaattatgcattaggtccaatgtctcag 245
Query: 50 t--tct--gtttcaggctcacgatgatcaatggtatatacatt--ctaggttgtataact 103
| ||| | |||||||||||||| | |||||| ||| ||| ||| ||||||||||
Sbjct: 246 tgctctcagcttcaggctcacgat--t-aatggtttat--atttgctaccttgtataact 300
Query: 104 gcacttca-tttctctaccaggaacctttcctcagattctgtcctcagcaaggatcccat 162
||||| || ||| |||||| |||| ||| |||||||| ||||||||||||||||| |||
Sbjct: 301 gcactacagttt-tctacctggaaacttgcctcagatcctgtcctcagcaaggat--cat 357
Query: 163 -ctaataccatcagacacttctatgc-atcagagggaacaaggtctagctgtgtgccttg 220
| || ||||||||| | |||||||| | |||||||||||| ||||||||||||||| ||
Sbjct: 358 gc-aacaccatcagaaaattctatgcta-cagagggaacaaagtctagctgtgtgccatg 415
Query: 221 caggttgggtagagcactgtcaatatcccttctcctccagcaaaccctctcaag-gttca 279
||| |||| |||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 416 cagtttggttagagcactgtcaatatcccttctcctccagcaaaccctctcaaatgctca 475
Query: 280 caacggttgtcttccaggataaaatctgattgcctaagagaaggagcaaatcatctcttc 339
||| | |||||||||| || ||| ||||| ||||||| |||||||||||| |||||| |
Sbjct: 476 caaagtttgtcttccaagacaaa-tctgagtgcctaaaagaaggagcaaagcatctccac 534
Query: 340 ttgttctaatgtctaaatgacattgcagattaagaaaaaccctag-agcttccccaagat 398
||| || ||| |||||||| |||||||||||||||||| |||||| || |||||||||||
Sbjct: 535 ttgctccaatatctaaatgccattgcagattaagaaaatccctagcag-ttccccaagat 593
Query: 399 tctcagtccgggagcatttgtacaatccattactttcatagggtccaaaattgtttgaat 458
||||||||| |||||||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct: 594 tctcagtccaggagcatttgggcaatctattactttcatagggtccaaacttgtttgaat 653
Query: 459 tctacagaccaatgaattgttccattagaagccaactttccagcaggtagcagcagctcc 518
||| |||||||||| |||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 654 tctgcagaccaatgcattgttccattagaagccaactcaccagcaggtagcagctgctcc 713
Query: 519 aactgctgtctccaaaggcagttaaacaaaagtaacctgaagaggcaggtgaactgctcc 578
||||||||||||||| |||| |||||||||| | |||||||||||| || |
Sbjct: 714 aactgctgtctccaatggcacctaaacaaaag---c----agaggcaggtgatcttataa 766
Query: 579 tggtcccaccaaggtgactttggtttctgatgggagggggcaattacatgctgtgaga 636
|||||||||||||||||||||| ||||| | |||| |||| |||| ||||||||||
Sbjct: 767 tggtcccaccaaggtgactttgacttctgttaggagcaggcacttacctgctgtgaga 824
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1048
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1038
Effective search space: 667434
Effective search space used: 667434
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
