BAC Information

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BAC

Clone NameMSMg01-209J04
ChromosomeX (Build37)
Map Location 115,134,091 - 115,134,405
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC624284, LOC665066, EG624388
Downstream geneENSMUSG00000072994, LOC100039551, Tgifx1, LOC665087
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209J04.T7 (MSMg01no209_j04.b1)MSMg01-209J04.TJ (MSMg01no209_j04.g1)
ACCAG392049AG392050
length725730
length of high quality
(start - end)
319 (46 - 364)266 (76 - 341)
definitionCHROMAT_FILE: MSMg01no209_j04.b1 PHD_FILE: MSMg01no209_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:45 2005CHROMAT_FILE: MSMg01no209_j04.g1 PHD_FILE: MSMg01no209_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCACAGTTATCTAATATTTTATTTGTAGATAATCTATTAAAATG
TATATATTTGATTCCCTAATACAAGTAAAAAAATCAATAACTAAAATACT
TATTCAAATGCCACCCTTCAGAAATCAACCCCAATTTTGTTTATGAATAT
CTTTTACTTCTGGATTTAGAAAGCCATATATAAACTTCTGTGGCATTTTT
TTTAGAGAGGTATCTATACATTTATTTACTGCTACAGTAACAATGACTTT
TTGCTACTATACTCTTCTAACACATTTATAGTTTTTGTTCTTTTGTTTAA
GTCTCTGATGCATTGTTTGTCCCCCCCCCCCCCAGATATTTGCCTTTCAA
ATGTTTTCCTCTTTCCTCGCCCCCCCTCCTAAAATCCCCTAACCTATTCC
CCCTCCCCCTGTTCAACAACTCACCCACTCCTGCTTTCTGGCTCTGACAT
TCCCCTATACTGGGGCATAGAACCTTCACAGGATCAAGGGCCTCTCCTCA
TCCCTCTCACTGATGTCCCATAAGGTCATCCTCTGCTATATATGTGGCTG
GAGCCATGGTTCATCACTTCCTTTGCTTTGTGTGTTAGTTTCCAGGAGTT
CTTGGCGCCACTTGGTTAGCCCATTATTGCTTGTTCACCCATTGGTTCTG
TCAACCCTCTTCATTCTTTTGACTN
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAACAGGTAAGGAAACAGGAGCTGG
TGCAGAGGCAATGGAGGGATGTTGCTTACTGACTTGCTTCCCTTGTCTTT
CTCAACCTGCTCTCTTATAGAACCCAGGGAACTTATGGGCTCTCTTATGC
CATCCCAGGGATGGTCCCACCCACAAGGGGCCCTCCCCACTTGATCACTA
ATTGAGAAAATGCCTTACAGTTGGATCTCATGGAGACATTTCCTCAACTG
AAGCTCCTTTCTCTGATAACTCCAGTTGTGTCAAGTTGACACAAAATCAC
CCAGTACACAGTTATATTTTTTGCCCCCCCCCCCCCCCTCATGACTATTG
TGAGGGGCGTTATTTCCCTAACTCCCCTCTCAAACTGATTATCTTTTACC
ACAGGAAGGCCATTGACATGCTTGAGATAATTTTATATCCAACCACTTTG
CCGATTTTGCTTACCTTACCATAGGCTCCCCAGTGTAATTTTTGCAGTCA
CGCGTGTATACCACCCCACCATCCGCAAATAGTGATACCCTGACTTCTCC
ACCTTGTATCCATTGAACTCTTTTTGCCGCGTCCCTGTCCTATTTCTACC
CCCCCCTTTCTTTTTCTGCCCACATAGTTTACACAGCATTTTTCCCCCGT
TTTTTTCTCCCCCATTGGCCACGGTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_j04.b1 MSMg01no209_j04.b1 CHROMAT_FILE:
MSMg01no209_j04.b1 PHD_FILE: MSMg01no209_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:45 2005
         (319 letters)



>mm_chrX_115133887_115134605
          Length = 719

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcacagttatctaatattttatttgtagataatctattaaaatgtatatattt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcacagttatctaatattttatttgtagataatctattaaaatgtatatattt 264

                                                                       
Query: 65  gattccctaatacaagtaaaaaaatcaataactaaaatacttattcaaatgccacccttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gattccctaatacaagtaaaaaaatcaataactaaaatacttattcaaatgccacccttc 324

                                                                       
Query: 125 agaaatcaaccccaattttgtttatgaatatcttttacttctggatttagaaagccatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agaaatcaaccccaattttgtttatgaatatcttttacttctggatttagaaagccatat 384

                                                                       
Query: 185 ataaacttctgtggcattttttttagagaggtatctatacatttatttactgctacagta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataaacttctgtggcattttttttagagaggtatctatacatttatttactgctacagta 444

                                                                       
Query: 245 acaatgactttttgctactatactcttctaacacatttatagtttttgttcttttgttta 304
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 445 acaatgactttttgctactatactcttctaatacatttatagtttttgttctttagttta 504

                          
Query: 305 agtctctgatgcatt 319
           |||||||||||||||
Sbjct: 505 agtctctgatgcatt 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)